| /dports/biology/gemma/GEMMA-0.98.3/src/ |
| H A D | ldr.cpp | 51 d_pace = cPar.d_pace; in CopyFromParam()
|
| H A D | varcov.cpp | 49 d_pace = cPar.d_pace; in CopyFromParam()
282 if (t % d_pace == 0 || t == (indicator_snp.size() - 1)) { in AnalyzeBimbam()
382 if (t % d_pace == 0 || t == (indicator_snp.size() - 1)) { in AnalyzePlink()
|
| H A D | prdt.cpp | 44 d_pace = cPar.d_pace; in CopyFromParam()
230 if (t % d_pace == 0 || t == (ns_total - 1)) { in AnalyzeBimbam()
344 if (t % d_pace == 0 || t == snpInfo.size() - 1) { in AnalyzePlink()
|
| H A D | lm.cpp | 51 d_pace = cPar.d_pace; in CopyFromParam()
333 if (t % d_pace == 0 || t == ng_total - 1) { in AnalyzeGene()
423 if (t % d_pace == 0 || t == (ns_total - 1)) { in AnalyzeBimbam()
549 if (t % d_pace == 0 || t == snpInfo.size() - 1) { in AnalyzePlink()
|
| H A D | ldr.h | 35 size_t d_pace; variable
|
| H A D | varcov.h | 37 int d_pace; variable
|
| H A D | prdt.h | 36 size_t d_pace; variable
|
| H A D | lm.h | 34 size_t d_pace; // Display pace. variable
|
| H A D | param.cpp | 95 : a_mode(0), k_mode(1), d_pace(DEFAULT_PACE), in PARAM()
1138 if (!file_gene.empty() && d_pace == DEFAULT_PACE) { in CheckData()
1139 d_pace = 1000; in CheckData()
1312 if (BimbamKin(file_str, setKSnps, indicator_snp, a_mode - 20, d_pace, in CalcKin()
1730 if (PlinkKin(file_str, d_pace, indicator_idv, indicator_snp, mapRS2wK, in CalcS()
1743 if (BimbamKinUncentered(file_str, setKSnps, d_pace, indicator_idv, in CalcS()
1749 if (BimbamKinUncentered(file_str, setKSnps, d_pace, indicator_idv, in CalcS()
1757 if (MFILEKin(1, file_mbfile, setKSnps, d_pace, indicator_idv, in CalcS()
1763 if (MFILEKin(1, file_mbfile, setKSnps, d_pace, indicator_idv, in CalcS()
1771 if (MFILEKin(0, file_mgeno, setKSnps, d_pace, indicator_idv, in CalcS()
[all …]
|
| H A D | mvlmm.h | 34 size_t d_pace; // Display pace. variable
|
| H A D | bslmmdap.h | 35 size_t d_pace; variable
|
| H A D | lmm.h | 54 size_t d_pace; // Display pace. variable
|
| H A D | gemma.cpp | 1064 cPar.d_pace = atoi(str.c_str()); in Assign()
2480 PlinkXwz(file_str, cPar.d_pace, cPar.indicator_idv, cPar.indicator_snp, in BatchRun()
2483 BimbamXwz(cPar.file_geno, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2486 MFILEXwz(1, cPar.file_mbfile, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2489 MFILEXwz(0, cPar.file_mgeno, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2504 BimbamXwz(cPar.file_geno, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2507 MFILEXwz(1, cPar.file_mbfile, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2510 MFILEXwz(0, cPar.file_mgeno, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2523 BimbamXtXwz(cPar.file_geno, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2526 MFILEXtXwz(1, cPar.file_mbfile, cPar.d_pace, cPar.indicator_idv, in BatchRun()
[all …]
|
| H A D | bslmm.h | 36 size_t d_pace; variable
|
| H A D | lmm.cpp | 55 d_pace = cPar.d_pace; in CopyFromParam()
1390 if (t % d_pace == 0 || t == ng_total - 1) { in AnalyzeGene()
1560 const size_t progress_step = (num_snps/50>d_pace ? num_snps/50 : d_pace); in Analyze()
1756 if (t % d_pace == 0 || t == snpInfo.size() - 1) { in AnalyzePlink()
2270 if (t % d_pace == 0 || t == (ns_total - 1)) { in AnalyzeBimbamGXE()
2430 if (t % d_pace == 0 || t == snpInfo.size() - 1) { in AnalyzePlinkGXE()
|
| H A D | param.h | 131 size_t d_pace = DEFAULT_PACE; // Display pace (-pace switch) variable
|
| H A D | bslmm.cpp | 52 d_pace = cPar.d_pace; in CopyFromParam()
993 if (t % d_pace == 0 || t == total_step - 1) { in MCMC()
1669 if (t % d_pace == 0 || t == total_step - 1) { in MCMC()
|
| H A D | mvlmm.cpp | 53 d_pace = cPar.d_pace; in CopyFromParam()
3211 if (t % d_pace == 0 || t == (ns_total - 1)) { in AnalyzeBimbam()
3669 if (t % d_pace == 0 || t == snpInfo.size() - 1) { in AnalyzePlink()
4197 if (t % d_pace == 0 || t == (ns_total - 1)) { in AnalyzeBimbamGXE()
4654 if (t % d_pace == 0 || t == snpInfo.size() - 1) { in AnalyzePlinkGXE()
|