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Searched refs:data_end_position (Results 1 – 13 of 13) sorted by relevance

/dports/biology/seqan/seqan-library-2.4.0/include/seqan/find/
H A Dfind_pattern_base.h77 TNeedlePosition data_end_position; variable
79 Pattern() : data_host(), data_begin_position(), data_end_position() in Pattern()
83 Pattern(TNeedle_ & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern()
87 Pattern(TNeedle_ const & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern()
288 return me.data_end_position;
294 return me.data_end_position;
302 me.data_end_position = _pos;
312 return TInfix(host(me), me.data_begin_position, me.data_end_position);
319 return TInfix(host(me), me.data_begin_position, me.data_end_position);
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/find/
H A Dfind_pattern_base.h77 TNeedlePosition data_end_position; variable
79 Pattern() : data_host(), data_begin_position(), data_end_position() in Pattern()
83 Pattern(TNeedle_ & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern()
87 Pattern(TNeedle_ const & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern()
288 return me.data_end_position;
294 return me.data_end_position;
302 me.data_end_position = _pos;
312 return TInfix(host(me), me.data_begin_position, me.data_end_position);
319 return TInfix(host(me), me.data_begin_position, me.data_end_position);
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/
H A Dfind_pattern_base.h76 TNeedlePosition data_end_position; variable
78 Pattern() : data_begin_position(), data_end_position() in Pattern()
82 Pattern(TNeedle_ & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern()
86 Pattern(TNeedle_ const & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern()
284 return me.data_end_position;
290 return me.data_end_position;
298 me.data_end_position = _pos;
308 return TInfix(host(me), me.data_begin_position, me.data_end_position);
315 return TInfix(host(me), me.data_begin_position, me.data_end_position);
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/sequence/
H A Dsegment_prefix.h73 typename Position<THost>::Type data_end_position; variable
81 data_end_position(0) in Segment()
86 data_end_position(length(_host)) in Segment()
91 data_end_position(_end_index) in Segment()
101 data_end_position(position(_end, _host)) in Segment()
113 data_end_position(endPosition(_other)) in Segment()
240 return begin(host(me), Standard()) + me.data_end_position; in end()
257 me.data_end_position = new_end; in setEndPosition()
283 me.data_end_position = new_length; in _setLength()
292 return me.data_end_position; in endPosition()
[all …]
H A Dsegment_infix.h71 typename Position<THost>::Type data_end_position; variable
87 data_end_position(0) in Segment()
96 data_end_position(length(value(data_host))) in Segment()
105 data_end_position(_end_index) in Segment()
122 data_end_position(position(_end, _host)) in Segment()
132 data_end_position(endPosition(_other)) in Segment()
264 return begin(host(me), Standard()) + me.data_end_position; in end()
271 return begin(host(me), Standard()) + me.data_end_position; in end()
280 return me.data_end_position; in endPosition()
286 return me.data_end_position; in endPosition()
[all …]
/dports/biology/seqan1/seqan-1.3.1/seqan/sequence/
H A Dsegment_prefix.h76 typename Position<THost>::Type data_end_position; variable
110 data_end_position(0) in Segment()
117 data_end_position(length(_host)) in Segment()
124 data_end_position(_end_index) in Segment()
138 data_end_position(position(_end, _host)) in Segment()
154 data_end_position(endPosition(_other)) in Segment()
289 return begin(host(me), Standard()) + me.data_end_position; in end()
308 me.data_end_position = new_end; in setEndPosition()
336 me.data_end_position = new_length; in _setLength()
346 return me.data_end_position; in endPosition()
[all …]
H A Dsegment_infix.h72 typename Position<THost>::Type data_end_position; variable
113 data_end_position(0) in Segment()
122 data_end_position(length(value(data_host))) in Segment()
131 data_end_position(_end_index) in Segment()
148 data_end_position(position(_end, _host)) in Segment()
157 data_end_position(endPosition(_other)) in Segment()
330 return begin(host(me), Standard()) + me.data_end_position; in end()
338 return begin(host(me), Standard()) + me.data_end_position; in end()
350 return me.data_end_position; in endPosition()
357 return me.data_end_position; in endPosition()
[all …]
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/sequence/
H A Dsegment_prefix.h73 typename Position<THost>::Type data_end_position; variable
81 data_end_position(0) in Segment()
86 data_end_position(length(_host)) in Segment()
91 data_end_position(_end_index) in Segment()
101 data_end_position(position(_end, _host)) in Segment()
113 data_end_position(endPosition(_other)) in Segment()
240 return begin(host(me), Standard()) + me.data_end_position; in end()
257 me.data_end_position = new_end; in setEndPosition()
283 me.data_end_position = new_length; in _setLength()
292 return me.data_end_position; in endPosition()
[all …]
H A Dsegment_infix.h71 typename Position<THost>::Type data_end_position; variable
87 data_end_position(0) in Segment()
96 data_end_position(length(value(data_host))) in Segment()
105 data_end_position(_end_index) in Segment()
122 data_end_position(position(_end, _host)) in Segment()
132 data_end_position(endPosition(_other)) in Segment()
264 return begin(host(me), Standard()) + me.data_end_position; in end()
271 return begin(host(me), Standard()) + me.data_end_position; in end()
280 return me.data_end_position; in endPosition()
286 return me.data_end_position; in endPosition()
[all …]
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/sequence/
H A Dsegment_prefix.h73 typename Position<THost>::Type data_end_position; variable
81 data_end_position(0) in Segment()
86 data_end_position(length(_host)) in Segment()
91 data_end_position(_end_index) in Segment()
101 data_end_position(position(_end, _host)) in Segment()
113 data_end_position(endPosition(_other)) in Segment()
248 return begin(host(me), Standard()) + me.data_end_position; in end()
267 me.data_end_position = new_end; in setEndPosition()
296 me.data_end_position = new_length; in _setLength()
306 return me.data_end_position; in endPosition()
[all …]
H A Dsegment_infix.h71 typename Position<THost>::Type data_end_position; variable
87 data_end_position(0) in Segment()
97 data_end_position(length(value(data_host))) in Segment()
107 data_end_position(_end_index) in Segment()
126 data_end_position(position(_end, _host)) in Segment()
137 data_end_position(endPosition(_other)) in Segment()
282 return begin(host(me), Standard()) + me.data_end_position; in end()
290 return begin(host(me), Standard()) + me.data_end_position; in end()
300 return me.data_end_position; in endPosition()
307 return me.data_end_position; in endPosition()
[all …]
/dports/biology/seqan1/seqan-1.3.1/seqan/find/
H A Dfind_pattern_base.h75 TNeedlePosition data_end_position; variable
222 return me.data_end_position;
228 return me.data_end_position;
236 me.data_end_position = _pos;
246 return TInfix(host(me), me.data_begin_position, me.data_end_position);
253 return TInfix(host(me), me.data_begin_position, me.data_end_position);
/dports/biology/seqan1/seqan-1.3.1/seqan/align/
H A Dgaps_array.h72 TViewPosition data_end_position; variable
119 data_end_position(other_.data_end_position), in Gaps()
132 data_end_position = other_.data_end_position;
201 return me.data_end_position; in endPosition()
208 return me.data_end_position; in endPosition()
245 return me.data_end_position + me.data_unclipped_end_position; in _unclippedLength()
255 me.data_end_position = _pos; in _setEndPosition()