/dports/biology/seqan/seqan-library-2.4.0/include/seqan/find/ |
H A D | find_pattern_base.h | 77 TNeedlePosition data_end_position; variable 79 Pattern() : data_host(), data_begin_position(), data_end_position() in Pattern() 83 Pattern(TNeedle_ & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern() 87 Pattern(TNeedle_ const & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern() 288 return me.data_end_position; 294 return me.data_end_position; 302 me.data_end_position = _pos; 312 return TInfix(host(me), me.data_begin_position, me.data_end_position); 319 return TInfix(host(me), me.data_begin_position, me.data_end_position);
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/find/ |
H A D | find_pattern_base.h | 77 TNeedlePosition data_end_position; variable 79 Pattern() : data_host(), data_begin_position(), data_end_position() in Pattern() 83 Pattern(TNeedle_ & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern() 87 Pattern(TNeedle_ const & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern() 288 return me.data_end_position; 294 return me.data_end_position; 302 me.data_end_position = _pos; 312 return TInfix(host(me), me.data_begin_position, me.data_end_position); 319 return TInfix(host(me), me.data_begin_position, me.data_end_position);
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/ |
H A D | find_pattern_base.h | 76 TNeedlePosition data_end_position; variable 78 Pattern() : data_begin_position(), data_end_position() in Pattern() 82 Pattern(TNeedle_ & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern() 86 Pattern(TNeedle_ const & ndl) : data_host(ndl), data_begin_position(), data_end_position() in Pattern() 284 return me.data_end_position; 290 return me.data_end_position; 298 me.data_end_position = _pos; 308 return TInfix(host(me), me.data_begin_position, me.data_end_position); 315 return TInfix(host(me), me.data_begin_position, me.data_end_position);
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/sequence/ |
H A D | segment_prefix.h | 73 typename Position<THost>::Type data_end_position; variable 81 data_end_position(0) in Segment() 86 data_end_position(length(_host)) in Segment() 91 data_end_position(_end_index) in Segment() 101 data_end_position(position(_end, _host)) in Segment() 113 data_end_position(endPosition(_other)) in Segment() 240 return begin(host(me), Standard()) + me.data_end_position; in end() 257 me.data_end_position = new_end; in setEndPosition() 283 me.data_end_position = new_length; in _setLength() 292 return me.data_end_position; in endPosition() [all …]
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H A D | segment_infix.h | 71 typename Position<THost>::Type data_end_position; variable 87 data_end_position(0) in Segment() 96 data_end_position(length(value(data_host))) in Segment() 105 data_end_position(_end_index) in Segment() 122 data_end_position(position(_end, _host)) in Segment() 132 data_end_position(endPosition(_other)) in Segment() 264 return begin(host(me), Standard()) + me.data_end_position; in end() 271 return begin(host(me), Standard()) + me.data_end_position; in end() 280 return me.data_end_position; in endPosition() 286 return me.data_end_position; in endPosition() [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/sequence/ |
H A D | segment_prefix.h | 76 typename Position<THost>::Type data_end_position; variable 110 data_end_position(0) in Segment() 117 data_end_position(length(_host)) in Segment() 124 data_end_position(_end_index) in Segment() 138 data_end_position(position(_end, _host)) in Segment() 154 data_end_position(endPosition(_other)) in Segment() 289 return begin(host(me), Standard()) + me.data_end_position; in end() 308 me.data_end_position = new_end; in setEndPosition() 336 me.data_end_position = new_length; in _setLength() 346 return me.data_end_position; in endPosition() [all …]
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H A D | segment_infix.h | 72 typename Position<THost>::Type data_end_position; variable 113 data_end_position(0) in Segment() 122 data_end_position(length(value(data_host))) in Segment() 131 data_end_position(_end_index) in Segment() 148 data_end_position(position(_end, _host)) in Segment() 157 data_end_position(endPosition(_other)) in Segment() 330 return begin(host(me), Standard()) + me.data_end_position; in end() 338 return begin(host(me), Standard()) + me.data_end_position; in end() 350 return me.data_end_position; in endPosition() 357 return me.data_end_position; in endPosition() [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/sequence/ |
H A D | segment_prefix.h | 73 typename Position<THost>::Type data_end_position; variable 81 data_end_position(0) in Segment() 86 data_end_position(length(_host)) in Segment() 91 data_end_position(_end_index) in Segment() 101 data_end_position(position(_end, _host)) in Segment() 113 data_end_position(endPosition(_other)) in Segment() 240 return begin(host(me), Standard()) + me.data_end_position; in end() 257 me.data_end_position = new_end; in setEndPosition() 283 me.data_end_position = new_length; in _setLength() 292 return me.data_end_position; in endPosition() [all …]
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H A D | segment_infix.h | 71 typename Position<THost>::Type data_end_position; variable 87 data_end_position(0) in Segment() 96 data_end_position(length(value(data_host))) in Segment() 105 data_end_position(_end_index) in Segment() 122 data_end_position(position(_end, _host)) in Segment() 132 data_end_position(endPosition(_other)) in Segment() 264 return begin(host(me), Standard()) + me.data_end_position; in end() 271 return begin(host(me), Standard()) + me.data_end_position; in end() 280 return me.data_end_position; in endPosition() 286 return me.data_end_position; in endPosition() [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/sequence/ |
H A D | segment_prefix.h | 73 typename Position<THost>::Type data_end_position; variable 81 data_end_position(0) in Segment() 86 data_end_position(length(_host)) in Segment() 91 data_end_position(_end_index) in Segment() 101 data_end_position(position(_end, _host)) in Segment() 113 data_end_position(endPosition(_other)) in Segment() 248 return begin(host(me), Standard()) + me.data_end_position; in end() 267 me.data_end_position = new_end; in setEndPosition() 296 me.data_end_position = new_length; in _setLength() 306 return me.data_end_position; in endPosition() [all …]
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H A D | segment_infix.h | 71 typename Position<THost>::Type data_end_position; variable 87 data_end_position(0) in Segment() 97 data_end_position(length(value(data_host))) in Segment() 107 data_end_position(_end_index) in Segment() 126 data_end_position(position(_end, _host)) in Segment() 137 data_end_position(endPosition(_other)) in Segment() 282 return begin(host(me), Standard()) + me.data_end_position; in end() 290 return begin(host(me), Standard()) + me.data_end_position; in end() 300 return me.data_end_position; in endPosition() 307 return me.data_end_position; in endPosition() [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/find/ |
H A D | find_pattern_base.h | 75 TNeedlePosition data_end_position; variable 222 return me.data_end_position; 228 return me.data_end_position; 236 me.data_end_position = _pos; 246 return TInfix(host(me), me.data_begin_position, me.data_end_position); 253 return TInfix(host(me), me.data_begin_position, me.data_end_position);
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/dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
H A D | gaps_array.h | 72 TViewPosition data_end_position; variable 119 data_end_position(other_.data_end_position), in Gaps() 132 data_end_position = other_.data_end_position; 201 return me.data_end_position; in endPosition() 208 return me.data_end_position; in endPosition() 245 return me.data_end_position + me.data_unclipped_end_position; in _unclippedLength() 255 me.data_end_position = _pos; in _setEndPosition()
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