| /dports/lang/mono/mono-5.10.1.57/mcs/class/System.Web/System.Web.UI/ |
| H A D | DataBoundLiteralControl.cs | 59 int dbLength = dataBoundLiterals.Length;
60 int max = (stLength > dbLength) ? stLength : dbLength;
64 if (i < dbLength)
89 int dbLength = dataBoundLiterals.Length; in Render()
90 int max = (stLength > dbLength) ? stLength : dbLength; in Render()
95 if (i < dbLength) in Render()
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| /dports/biology/star/STAR-2.7.9a/source/opal/ |
| H A D | opal.cpp | 256 while (numEndedDbSeqs < dbLength) { in searchDatabaseSW_()
508 int dbLength_ = startIdx + chunkSize >= dbLength ? dbLength - startIdx : chunkSize; in searchDatabaseSW()
697 while (numEndedDbSeqs < dbLength) { in searchDatabase_()
996 int dbLength_ = startIdx + chunkSize >= dbLength ? dbLength - startIdx : chunkSize; in searchDatabase()
1448 bool *skip = new bool[dbLength]; in opalSearchDatabase()
1449 for (int i = 0; i < dbLength; i++) { in opalSearchDatabase()
1480 for (int i = 0; i < dbLength; i++) { in opalSearchDatabase()
1511 for (int i = 0; i < dbLength; i++) { in opalSearchDatabase()
1531 bool* calculated = new bool[dbLength]; in opalSearchDatabaseCharSW()
1532 for (int i = 0; i < dbLength; i++) { in opalSearchDatabaseCharSW()
[all …]
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| H A D | opal.h | 151 unsigned char query[], int queryLength, unsigned char* db[], int dbLength,
163 unsigned char query[], int queryLength, unsigned char** db, int dbLength,
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | global_sse2.h | 24 int dbLength,
34 int dbLength,
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| H A D | glocal_sse2.h | 24 int dbLength,
34 int dbLength,
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| H A D | global_sse2.c | 43 int dbLength, in global_sse2_word() argument
132 for (i = 0; i < dbLength; ++i) { in global_sse2_word()
279 distance = (queryLength + dbLength) * gapExtend; in global_sse2_word()
289 int dbLength, in global_sse2_byte() argument
395 for (i = 0; i < dbLength; ++i) { in global_sse2_byte()
535 distance = (queryLength + dbLength) * gapExtend; in global_sse2_byte()
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| H A D | glocal_sse2.c | 42 int dbLength, in glocal_sse2_word() argument
142 for (i = 0; i < dbLength; ++i) { in glocal_sse2_word()
316 int dbLength, in glocal_sse2_byte() argument
430 for (i = 0; i < dbLength; ++i) { in glocal_sse2_byte()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | needleman.c | 303 Int4 dbLength,dbBytes; in NeedlemanWunschQuadraticByLoc() local
316 dbSequence = FetchSequenceByLoc(slp2,&dbLength,&BspLen2); in NeedlemanWunschQuadraticByLoc()
329 dbBytes = dbLength/4+(dbLength%4==0 ? 0 : 1); in NeedlemanWunschQuadraticByLoc()
340 for(dbPos = 0; dbPos < dbLength; dbPos++) { in NeedlemanWunschQuadraticByLoc()
396 dbPos = dbLength-1; in NeedlemanWunschQuadraticByLoc()
507 Int4 max_len2 = slp_start2+dbLength; in NeedlemanWunschQuadraticByLoc()
628 Lambda, Kappa,queryLength,dbLength); in NeedlemanWunschQuadraticByLoc()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | seedtop.c | 165 Nlm_FloatHi dbLength, adjustdbLength; /*total number of characters in database*/ in Main() local
333 dbLength = 0; in Main()
351 dbLength = (Nlm_FloatHi) readdb_get_dblen(rdpt); in Main()
371 (patternSearch->patternProbability * dbLength > in Main()
399 adjustdbLength = dbLength - (num_seq * patternSearch->minPatternMatchLength); in Main()
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| H A D | profiles.c | 140 proDemographics->dbLength = 0; in initDemographics()
359 Int4 dbLength; /*sum of actual lengths of database sequences*/ in computeL() local
409 dbLength = 0; in computeL()
413 dbLength += dbSeqLengths[profileIndex]; in computeL()
418 Nestimate = queryLengthMinusX * dbLength; in computeL()
420 proDemographics->dbLength = dbLength; in computeL()
508 Int4 queryLength, Uint1 *dbSequence, Int4 dbLength, BLAST_Score **matrix, in basicSmithWatermanScoreOnly() argument
539 for(dbPos = 0; dbPos < dbLength; dbPos++) { in basicSmithWatermanScoreOnly()
605 Int4 queryLength, Uint1 *dbSequence, Int4 dbLength, BLAST_Score **matrix, in SmithWatermanFindStartGivenEnd() argument
704 Int4 queryLength, Uint1 *dbSequence, Int4 dbLength, BLAST_Score **matrix, in specialSmithWatermanScoreOnly() argument
[all …]
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| H A D | copymat.c | 425 Int4 dbLength; /*length of database*/ in findTotalLength() local
438 fscanf(matrixAuxiliaryFile, "%d", &dbLength); in findTotalLength()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
| H A D | cuSimpleB2SWrapper.cpp | 181 Int8 CSimpleB2SWrapper::SetDbLength(Int8 dbLength) in SetDbLength() argument
183 if (dbLength > 0 && m_options.NotEmpty()) { in SetDbLength()
184 m_dbLength = dbLength; in SetDbLength()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/gustaf/ |
| H A D | gustaf_matepairs.h | 250 unsigned dbLength = length(source(sMatch.row1)); in _checkRightMateMatches() local
251 …TPos mateIntervalBegin = _min(dbLength, sMatch.begin1 + options.libSize - gustafChain.mateJoinPosi… in _checkRightMateMatches()
252 …TPos mateIntervalEnd = _min(dbLength, sMatch.end1 + options.libSize - gustafChain.mateJoinPosition… in _checkRightMateMatches()
253 …SEQAN_ASSERT_GEQ_MSG(dbLength, mateIntervalBegin, "Calculated valid region for right mate exceeds … in _checkRightMateMatches()
254 …SEQAN_ASSERT_GEQ_MSG(dbLength, mateIntervalEnd, "Calculated valid region for right mate exceeds da… in _checkRightMateMatches()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/blast/ |
| H A D | blast_statistics.h | 903 _lengthAdjustment(TSize const & dbLength,
915 double n = (double)dbLength;
1107 uint64_t const dbLength,
1113 uint64_t adj = _lengthAdjustment(dbLength, queryLength, scheme);
1114 return _computeEValue(rawScore, queryLength - adj, dbLength - adj, scheme);
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/blast/ |
| H A D | blast_statistics.h | 903 _lengthAdjustment(TSize const & dbLength,
915 double n = (double)dbLength;
1107 uint64_t const dbLength,
1113 uint64_t adj = _lengthAdjustment(dbLength, queryLength, scheme);
1114 return _computeEValue(rawScore, queryLength - adj, dbLength - adj, scheme);
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | pseed3.c | 446 Int8 dbLength; /*total number of characters in database*/ in seedEngineCore() local
499 dbLength = 0; in seedEngineCore()
500 readdb_get_totals(search->rdfp, &dbLength, &num_seq); in seedEngineCore()
509 (patternSearch->patternProbability * (FloatHi) dbLength > EXPECT_MATCH_THRESH)) { in seedEngineCore()
1099 Int4 LIBCALL eValueFit(Nlm_FloatHi eThresh, Nlm_FloatHi dbLength, seedSearchItems *seedSearch, in eValueFit() argument
1107 while (e_value(highScore, dbLength, seedSearch->paramC, in eValueFit()
1113 if (e_value(targetScore, dbLength, seedSearch->paramC, in eValueFit()
1155 Int4 q_pat_len, Nlm_FloatHi dbLength, GapAlignBlkPtr gap_align, in output_hits() argument
1206 probability = ((Nlm_FloatHi) numOccurrences / dbLength); in output_hits()
1219 eValueForMatch = e_value(oneHit->l_score, dbLength, in output_hits()
[all …]
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| H A D | seed.h | 301 Int4 len, Nlm_FloatHi dbLength, GapAlignBlkPtr gap_align, Boolean is_dna,
320 Int4 LIBCALL eValueFit PROTO((Nlm_FloatHi eThresh, Nlm_FloatHi dbLength,
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| H A D | profiles.h | 101 Int4 dbLength; member
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| H A D | rpsutil.c | 385 Int4 dbLength; /*length of database*/ in getAuxInformation() local
409 fscanf(matrixAuxiliaryFile, "%d", &dbLength); in getAuxInformation()
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| /dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/ |
| H A D | SmithWatermanAlgorithmSSE2.h | 52 …int calculateMatrixSSE2(unsigned queryLength, unsigned char *dbSeq, unsigned dbLength, unsigned sh…
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| H A D | SmithWatermanAlgorithmSSE2.cpp | 988 …alculateMatrixSSE2(unsigned queryLength, unsigned char *dbSeq, unsigned dbLength, unsigned short g… in calculateMatrixSSE2() argument
1076 for (i = 0; i < dbLength; ++i) { in calculateMatrixSSE2()
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| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhprefilter.h | 115 int dbLength,
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| H A D | hhprefilter.cpp | 71 unsigned char *dbSeq, int dbLength, unsigned short gapOpen, in swStripedByte() argument
102 int32_t edge, begin = 0, end = dbLength, step = 1; in swStripedByte()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/cd_utils/ |
| H A D | cuSimpleB2SWrapper.hpp | 102 Int8 SetDbLength(Int8 dbLength);
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/stellar/ |
| H A D | stellar_output.h | 37 _computeLengthAdjustment(TSize dbLength, TSize queryLength) { in _computeLengthAdjustment() argument
45 double n = (double)dbLength; in _computeLengthAdjustment()
|