Searched refs:dbsequencecount (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/vsearch/vsearch-2.17.1/src/ |
| H A D | shuffle.cc | 74 int dbsequencecount = db_getsequencecount(); in shuffle() local
75 int * deck = (int*) xmalloc(dbsequencecount * sizeof(int)); in shuffle()
77 for(int i=0; i<dbsequencecount; i++) { in shuffle()
83 progress_init("Shuffling", dbsequencecount-1); in shuffle()
84 for(int i=dbsequencecount-1; i>0; i--) in shuffle()
100 passed = MIN(dbsequencecount, opt_topn); in shuffle()
|
| H A D | subsample.cc | 114 int dbsequencecount = db_getsequencecount(); in subsample() local
119 mass_total = dbsequencecount; in subsample()
121 for(int i=0; i<dbsequencecount; i++) { in subsample()
130 mass_total, dbsequencecount); in subsample()
136 mass_total, dbsequencecount); in subsample()
141 int * abundance = (int*) xmalloc(dbsequencecount * sizeof(int)); in subsample()
143 for(int i=0; i<dbsequencecount; i++) { in subsample()
196 progress_init("Writing output", dbsequencecount); in subsample()
197 for(int i=0; i<dbsequencecount; i++) in subsample()
|
| H A D | sortbysize.cc | 111 int dbsequencecount = db_getsequencecount(); in sortbysize() local
113 progress_init("Getting sizes", dbsequencecount); in sortbysize()
116 xmalloc(dbsequencecount * sizeof(sortinfo_size_s)); in sortbysize()
120 for(int i=0; i<dbsequencecount; i++) in sortbysize()
|
| H A D | sortbylength.cc | 116 int dbsequencecount = db_getsequencecount(); in sortbylength() local
118 xmalloc(dbsequencecount * sizeof(sortinfo_length_s)); in sortbylength()
122 progress_init("Getting lengths", dbsequencecount); in sortbylength()
123 for(int i=0; i<dbsequencecount; i++) in sortbylength()
|
| H A D | derep.cc | 828 int64_t dbsequencecount = db_getsequencecount(); in derep_prefix() local
834 while (3 * dbsequencecount > 2 * hashtablesize) in derep_prefix()
855 = (unsigned int*) xmalloc(sizeof(unsigned int) * dbsequencecount); in derep_prefix()
857 memset(nextseqtab, -1, sizeof(unsigned int) * dbsequencecount); in derep_prefix()
868 progress_init("Dereplicating", dbsequencecount); in derep_prefix()
869 for(int64_t i=0; i<dbsequencecount; i++) in derep_prefix()
|