| /dports/biology/vcflib/vcflib-1.0.2/src/ |
| H A D | ssw_cpp.hpp | 62 uint16_t distance_filter; // ((ref_end - ref_begin) < distance_filter) && member
69 , distance_filter(32767) in Filter()
76 , distance_filter(dis) in Filter()
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| H A D | ssw_cpp.cpp | 351 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
395 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
| H A D | ssw_cpp.hpp | 53 uint16_t distance_filter; // ((ref_end - ref_begin) < distance_filter) && member
60 , distance_filter(32767) in Filter()
67 , distance_filter(dis) in Filter()
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| H A D | ssw_cpp.cpp | 342 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
386 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/SeqLib/ |
| H A D | ssw_cpp.h | 51 uint16_t distance_filter; // ((ref_end - ref_begin) < distance_filter) && member
58 , distance_filter(32767) in Filter()
65 , distance_filter(dis) in Filter()
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
| H A D | ssw_cpp.hpp | 53 uint16_t distance_filter; // ((ref_end - ref_begin) < distance_filter) && member
60 , distance_filter(32767) in Filter()
67 , distance_filter(dis) in Filter()
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| H A D | ssw_cpp.cpp | 342 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
386 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
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| /dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/alignment/ |
| H A D | _ssw_wrapper.pyx | 445 `score_filter`, `distance_filter`, and `override_skip_babp`. It has the
453 of other arguments), `distance_filter` (may prevent cigar, but will
457 distance_filter : int, optional
460 `distance_filter` saving some time computationally. The results of
530 cdef cnp.int32_t distance_filter
547 distance_filter=None, argument
563 self.distance_filter = 0 if distance_filter is None else \
564 distance_filter
637 self.score_filter, self.distance_filter,
660 if self.distance_filter != 0:
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| H A D | _ssw_wrapper.c | 1187 __pyx_t_5numpy_int32_t distance_filter; member
5752 __pyx_v_self->distance_filter = __pyx_t_4; in __pyx_pf_5skbio_9alignment_12_ssw_wrapper_20StripedSmithWaterman___cinit__()
6343 …y, __pyx_v_self->bit_flag, __pyx_v_self->score_filter, __pyx_v_self->distance_filter, __pyx_v_self… in __pyx_pf_5skbio_9alignment_12_ssw_wrapper_20StripedSmithWaterman_2__call__()
6709 __pyx_t_1 = ((__pyx_v_self->distance_filter != 0) != 0); in __pyx_pf_5skbio_9alignment_12_ssw_wrapper_20StripedSmithWaterman_6_get_bit_flag()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/src/ |
| H A D | ssw_cpp.cpp | 346 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
390 flag, filter.score_filter, filter.distance_filter, query_len); in Align()
|
| /dports/cad/meshlab/meshlab-Meshlab-2020.05/src/plugins_unsupported/edit_phototexturing/src/ |
| H A D | PhotoTexturer.cpp | 469 TextureFilterSTD *distance_filter = NULL; in unprojectToOriginalTextureMap() local
476 distance_filter = new TextureFilterSTD(imgResX,imgResY,distance_weight); in unprojectToOriginalTextureMap()
580 distance_filter->setValue(x,imgResY-(y+1),distance); in unprojectToOriginalTextureMap()
616 container->addFilter(distance_filter); in unprojectToOriginalTextureMap()
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| /dports/lang/gambit-c/gambit-4.9.3/contrib/GambitREPL/ |
| H A D | ViewController.h | 60 void setup_location_updates(double desired_accuracy, double distance_filter);
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| H A D | ViewController.m | 2496 void setup_location_updates(double desired_accuracy, double distance_filter)
2518 if (distance_filter < 0.0)
2522 if (distance_filter > 0.0)
2523 vc->locationManager.distanceFilter = distance_filter;
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| /dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/alignment/tests/ |
| H A D | test_ssw.py | 205 distance_filter=None,
|