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Searched refs:dosage_compen (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Dgrm.cpp456 void gcta::dc(int dosage_compen) { in dc() argument
458 if (dosage_compen == 1) cout << "full dosage compensation ..." << endl; in dc()
459 else if (dosage_compen == 0) cout << "no dosage compensation ..." << endl; in dc()
463 if (dosage_compen == 1) { in dc()
467 else if (dosage_compen == 0) { in dc()
480 …ndi_file, string sex_file, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool merge_gr… in manipulate_grm() argument
493 if (dosage_compen>-1) dc(dosage_compen); in manipulate_grm()
509 …ndi_file, string sex_file, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool merge_gr… in save_grm() argument
510 if (dosage_compen>-1) check_sex(); in save_grm()
511 … keep_indi_file, remove_indi_file, sex_file, grm_cutoff, adj_grm_fac, dosage_compen, merge_grm_fla… in save_grm()
H A Doption.cpp71 int dosage_compen = -2, out_pc_num = 20, make_grm_mtd = 0, pcl_grm_N = 0; in option() local
394 dosage_compen = atoi(argv[++i]); in option()
395 cout << "--dc " << dosage_compen << endl; in option()
396 …if (dosage_compen != 0 && dosage_compen != 1) throw ("\nError: the value to be specified after --d… in option()
946 } else if (dosage_compen>-1) { in option()
959 …if (dosage_compen>-1 && update_sex_file.empty()) throw ("Error: you need to specify the sex inform… in option()
967 …if (dosage_compen>-1.0) cout << "Warning: the option --dc option is disabled in this analysis." <<… in option()
1118 …m_indi_file, update_sex_file, mphen, mphen2, grm_cutoff, grm_adj_fac, dosage_compen, m_grm_flag, p… in option()
1120 …_file, rm_indi_file, update_sex_file, mphen, grm_cutoff, grm_adj_fac, dosage_compen, m_grm_flag, p… in option()
1123 …kp_indi_file, rm_indi_file, update_sex_file, grm_cutoff, grm_adj_fac, dosage_compen, m_grm_flag, g… in option()
H A Dbivar_reml.cpp15 …le, int mphen, int mphen2, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool m_grm_fl… in fit_bivar_reml() argument
62 if (dosage_compen>-1) dc(dosage_compen); in fit_bivar_reml()
191 if (dosage_compen>-1) dc(dosage_compen); in fit_bivar_reml()
H A Dgcta.h101 …ndi_file, string sex_file, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool merge_gr…
109 …tring sex_file, int mphen, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool m_grm_fl…
120 …le, int mphen, int mphen2, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool m_grm_fl…
227 void dc(int dosage_compen);
228 …ndi_file, string sex_file, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool merge_gr…
H A Dest_hsq.cpp171 …tring sex_file, int mphen, double grm_cutoff, double adj_grm_fac, int dosage_compen, bool m_grm_fl… in fit_reml() argument
228 if (dosage_compen>-1) dc(dosage_compen); in fit_reml()
304 if (dosage_compen>-1) dc(dosage_compen); in fit_reml()