| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | dp_algorithm_impl.h | 314 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeTrack()
330 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeTrack()
342 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeTrack()
583 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeBandedAlignment()
600 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeBandedAlignment()
634 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeBandedAlignment()
758 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeBandedAlignment()
778 … previousCellDiagonal(dpScoreMatrixNavigator), previousCellHorizontal(dpScoreMatrixNavigator), in _computeBandedAlignment()
1272 prevDiagonal = value(dpScoreMatrixNavigator); in _computeHammingDistance()
1438 TDPScoreMatrixNavigator dpScoreMatrixNavigator; in _computeAlignment() local
[all …]
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_dp_matrix_navigator.h | 85 SEQAN_ASSERT_EQ(dpScoreMatrixNavigator._laneLeap, 1); in testAlignmentDPMatrixNavigatorScoreMarixInitUnbanded()
108 SEQAN_ASSERT_EQ(dpScoreMatrixNavigator._laneLeap, -9); in testAlignmentDPMatrixNavigatorScoreMarixSparseInitUnbanded()
131 SEQAN_ASSERT_EQ(dpScoreMatrixNavigator._laneLeap, 4); in testAlignmentDPMatrixNavigatorScoreMarixInitBanded()
147 SEQAN_ASSERT_EQ(dpScoreMatrixNavigator._laneLeap, 8); in testAlignmentDPMatrixNavigatorScoreMarixInitBanded()
161 SEQAN_ASSERT_EQ(dpScoreMatrixNavigator._laneLeap, 1); in testAlignmentDPMatrixNavigatorScoreMarixInitBanded()
374 assignValue(dpScoreMatrixNavigator, tmp); in testAlignmentDPScoreMatrixNavigatorAssignValue()
397 assignValue(dpScoreMatrixNavigator, tmp); in testAlignmentDPScoreMatrixNavigatorValue()
422 dpScoreMatrixNavigator._prevColIterator = dpScoreMatrixNavigator._activeColIterator; in testAlignmentDPScoreMatrixNavigatorPreviousCellHorizontal()
423 *dpScoreMatrixNavigator._activeColIterator = 20; in testAlignmentDPScoreMatrixNavigatorPreviousCellHorizontal()
447 dpScoreMatrixNavigator._activeColIterator += 7; in testAlignmentDPScoreMatrixNavigatorCoordinate()
[all …]
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_algorithm_impl.h | 346 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeTrack() argument
372 value(dpScoreMatrixNavigator), in _computeTrack()
393 value(dpScoreMatrixNavigator), in _computeTrack()
395 previousCellHorizontal(dpScoreMatrixNavigator), in _computeTrack()
405 value(dpScoreMatrixNavigator), in _computeTrack()
418 value(dpScoreMatrixNavigator), in _computeTrack()
439 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeTrack() argument
490 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeAlignmentImpl() argument
590 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeAlignmentImpl() argument
1037 TDPCell prevDiagonal = value(dpScoreMatrixNavigator); in _computeHammingDistance()
[all …]
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_algorithm_impl.h | 346 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeTrack() argument
372 value(dpScoreMatrixNavigator), in _computeTrack()
393 value(dpScoreMatrixNavigator), in _computeTrack()
395 previousCellHorizontal(dpScoreMatrixNavigator), in _computeTrack()
405 value(dpScoreMatrixNavigator), in _computeTrack()
418 value(dpScoreMatrixNavigator), in _computeTrack()
439 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeTrack() argument
490 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeAlignmentImpl() argument
590 TDPScoreMatrixNavigator & dpScoreMatrixNavigator, in _computeAlignmentImpl() argument
1037 TDPCell prevDiagonal = value(dpScoreMatrixNavigator); in _computeHammingDistance()
[all …]
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_parallel/ |
| H A D | wavefront_task_util.h | 152 TDPScoreMatrixNavigator dpScoreMatrixNavigator{dpScoreMatrix, DPBandConfig<BandOff>{}};
156 _computeAlignmentImpl(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV,
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_parallel/ |
| H A D | wavefront_task_util.h | 152 TDPScoreMatrixNavigator dpScoreMatrixNavigator{dpScoreMatrix, DPBandConfig<BandOff>{}};
156 _computeAlignmentImpl(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV,
|