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Searched refs:dropoff_1st_pass (Results 1 – 11 of 11) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dblastconcat.c121 BLAST_Score dropoff_1st_pass, /* Dropoff ("X") used for the first pass */ in GetNumSpacers() local
287 dropoff_1st_pass_bits = options->dropoff_1st_pass; in GetNumSpacers()
302 dropoff_1st_pass in GetNumSpacers()
311 if( max_dropoff < dropoff_1st_pass ) max_dropoff = dropoff_1st_pass; in GetNumSpacers()
H A Dblastdef.h1102 Nlm_FloatHi dropoff_1st_pass, /* dropoff ("X") used for 1st pass. */ member
1360 dropoff_1st_pass, /* dropoff ("X") used for 1st pass. */ member
H A Dblast.c5390 if (options->dropoff_1st_pass == 0) in BLASTSetUpSearchInternalByLoc()
5391 options->dropoff_1st_pass = DROPOFF_NUMBER_OF_BITS; in BLASTSetUpSearchInternalByLoc()
5421 …if (blast_set_parameters(search, options->dropoff_1st_pass, options->dropoff_2nd_pass, avglen, sea… in BLASTSetUpSearchInternalByLoc()
5432 search->pbp->dropoff_1st_pass *= options->scalingFactor; in BLASTSetUpSearchInternalByLoc()
7040 pbp->X = pbp->dropoff_1st_pass; in BlastWordFinder()
7300 pbp->X = pbp->dropoff_1st_pass; in BlastWordFinder_mh()
10193 BLAST_Score dropoff_1st_pass, dropoff_2nd_pass; in blast_set_parameters() local
10319 …dropoff_1st_pass = (BLAST_Score) ceil((Nlm_FloatHi) dropoff_number_of_bits_1st_pass * NCBIMATH_LN2… in blast_set_parameters()
10320 dropoff_1st_pass = (BLAST_Score) MIN((Nlm_FloatHi) dropoff_1st_pass, s); in blast_set_parameters()
10340 pbp->dropoff_1st_pass = -dropoff_1st_pass; in blast_set_parameters()
H A Dblastool.c1575 options->dropoff_1st_pass = 7; in BLASTOptionNewEx()
1633 options->dropoff_2nd_pass = options->dropoff_1st_pass; in BLASTOptionNewEx()
H A Dblastutl.c4631 options->dropoff_1st_pass, in BioseqBlastEngineCore()
5169 options->dropoff_1st_pass, in BioseqBlastEngineByLocWithCallbackMult()
/dports/biology/py-biopython/biopython-1.79/Tests/
H A Dtest_NCBITextParser.py153 self.assertEqual(len(record.dropoff_1st_pass), 2)
154 self.assertEqual(record.dropoff_1st_pass[0], 16)
216 self.assertEqual(len(record.dropoff_1st_pass), 2)
217 self.assertEqual(record.dropoff_1st_pass[0], 16)
374 self.assertEqual(len(record.dropoff_1st_pass), 2)
375 self.assertEqual(record.dropoff_1st_pass[0], 15)
455 self.assertEqual(len(record.dropoff_1st_pass), 2)
456 self.assertEqual(record.dropoff_1st_pass[0], 15)
563 self.assertEqual(len(record.dropoff_1st_pass), 2)
564 self.assertEqual(record.dropoff_1st_pass[0], 16)
[all …]
/dports/biology/py-biopython/biopython-1.79/Bio/Blast/
H A DRecord.py415 self.dropoff_1st_pass = (None, None)
/dports/biology/py-biopython/biopython-1.79/Bio/SearchIO/_legacy/
H A DNCBIStandalone.py831 attempt_read_and_call(uhandle, consumer.dropoff_1st_pass, start="X1")
1560 def dropoff_1st_pass(self, line): member in _ParametersConsumer
1566 self._params.dropoff_1st_pass = _safe_int(score), _safe_float(bits)
/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/
H A Dcddposutil.c1879 if (options->dropoff_1st_pass == 0) in CddSetUpSearchInternalByLoc()
1880 options->dropoff_1st_pass = DROPOFF_NUMBER_OF_BITS; in CddSetUpSearchInternalByLoc()
1896 …if (blast_set_parameters(search, options->dropoff_1st_pass, options->dropoff_2nd_pass, avglen, sea… in CddSetUpSearchInternalByLoc()
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dblastall.c2063 if(options->dropoff_1st_pass > options->dropoff_2nd_pass) in Main_old()
2064 options->dropoff_1st_pass = options->dropoff_2nd_pass; in Main_old()
/dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/
H A Dwwwbutl.c1331 options->dropoff_1st_pass = atof(chptr); in WWWCreateSearchOptions()