Searched refs:dsg2prob (Results 1 – 4 of 4) sorted by relevance
/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | vcfgtcheck.c | 67 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member 384 args->dsg2prob[i][j] = HUGE_VAL; in init_data() 385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 388 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 459 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob() 460 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob() [all …]
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/dports/biology/bcftools/bcftools-1.14/ |
H A D | vcfgtcheck.c | 67 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member 384 args->dsg2prob[i][j] = HUGE_VAL; in init_data() 385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 388 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 459 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob() 460 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | vcfgtcheck.c | 67 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member 384 args->dsg2prob[i][j] = HUGE_VAL; in init_data() 385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 388 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 459 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob() 460 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob() [all …]
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H A D | vcfgtcheck.c.pysam.c | 69 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member 386 args->dsg2prob[i][j] = HUGE_VAL; in init_data() 387 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 388 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 390 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 391 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 395 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 461 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob() 462 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob() [all …]
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