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Searched refs:dsg2prob (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dvcfgtcheck.c67 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member
384 args->dsg2prob[i][j] = HUGE_VAL; in init_data()
385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
388 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
459 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob()
460 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob()
[all …]
/dports/biology/bcftools/bcftools-1.14/
H A Dvcfgtcheck.c67 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member
384 args->dsg2prob[i][j] = HUGE_VAL; in init_data()
385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
388 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
459 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob()
460 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dvcfgtcheck.c67 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member
384 args->dsg2prob[i][j] = HUGE_VAL; in init_data()
385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
388 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
459 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob()
460 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob()
[all …]
H A Dvcfgtcheck.c.pysam.c69 double *hwe_prob, dsg2prob[8][3], pl2prob[256]; member
386 args->dsg2prob[i][j] = HUGE_VAL; in init_data()
387 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
388 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
390 args->dsg2prob[2][0] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
391 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
395 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
461 prob[0] = args->dsg2prob[dsg][0]; in gt_to_prob()
462 prob[1] = args->dsg2prob[dsg][1]; in gt_to_prob()
[all …]