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Searched refs:dupeWriter (Results 1 – 3 of 3) sorted by relevance

/dports/biology/bbmap/bbmap/current/jgi/
H A DDedupeProtein.java395 dupeWriter=null; in DedupeProtein()
398 dupeWriter=new ByteStreamWriter(ff); in DedupeProtein()
426 if(dupeWriter!=null){dupeWriter.start();} in process2()
446 if(dupeWriter!=null){dupeWriter.poisonAndWait();} in process2()
1778 if(dupeWriter==null){return;} in addDupe()
1780 synchronized(dupeWriter){ in addDupe()
1781 dupeWriter.println(r); in addDupe()
1783 dupeWriter.println(r.mate); in addDupe()
4772 private final ByteStreamWriter dupeWriter; field in DedupeProtein
H A DDedupe.java428 dupeWriter=null; in Dedupe()
431 dupeWriter=new ByteStreamWriter(ff); in Dedupe()
459 if(dupeWriter!=null){dupeWriter.start();} in process2()
479 if(dupeWriter!=null){dupeWriter.poisonAndWait();} in process2()
1849 if(dupeWriter==null){return;}
1851 synchronized(dupeWriter){
1852 dupeWriter.println(r);
1854 dupeWriter.println(r.mate);
5634 private final ByteStreamWriter dupeWriter;
H A DDedupe2.java395 dupeWriter=null; in Dedupe2()
398 dupeWriter=new ByteStreamWriter(ff); in Dedupe2()
426 if(dupeWriter!=null){dupeWriter.start();} in process2()
445 if(dupeWriter!=null){dupeWriter.poisonAndWait();} in process2()
1775 if(dupeWriter==null){return;}
1777 synchronized(dupeWriter){
1778 dupeWriter.println(r);
1780 dupeWriter.println(r.mate);
5457 private final ByteStreamWriter dupeWriter;