| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/pubseq_gateway/impl/diag/ |
| H A D | IdLogUtl.hpp | 58 eFatal, enumerator
72 case eFatal: return "eFatal"; in GetErrCodeString()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/ |
| H A D | ncbi_toolkit.cpp | 88 ESeverity sev = eFatal; in Severity()
95 case eDiag_Fatal: sev = eFatal; break; in Severity()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/ |
| H A D | ncbi_toolkit.cpp | 88 ESeverity sev = eFatal; in Severity()
95 case eDiag_Fatal: sev = eFatal; break; in Severity()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/ |
| H A D | gene_names.cpp | 144 DISCREPANCY_CASE(EC_NUMBER_ON_UNKNOWN_PROTEIN, FEAT, eDisc | eSubmitter | eSmart | eFatal, "EC numb…
182 DISCREPANCY_CASE(SHOW_HYPOTHETICAL_CDS_HAVING_GENE_NAME, FEAT, eDisc | eSubmitter | eSmart | eFatal…
232 DISCREPANCY_CASE(DUPLICATE_LOCUS_TAGS, SEQUENCE, eDisc | eOncaller | eSubmitter | eSmart | eFatal, …
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| H A D | discrepancy_case.cpp | 113 DISCREPANCY_CASE(MISSING_PROTEIN_ID, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Missing Prote…
129 DISCREPANCY_CASE(INCONSISTENT_PROTEIN_ID, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Inconsis…
181 DISCREPANCY_CASE(N_RUNS, SEQUENCE, eDisc | eSubmitter | eSmart | eBig | eFatal, "More than 10 Ns in…
519 DISCREPANCY_CASE(CONTAINED_CDS, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Contained CDs")
802 DISCREPANCY_CASE(MISSING_LOCUS_TAGS, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Missing locus…
832 DISCREPANCY_CASE(NO_LOCUS_TAGS, FEAT, eDisc | eSubmitter | eSmart | eFatal, "No locus tags at all")
978 DISCREPANCY_CASE(SEGSETS_PRESENT, SEQ_SET, eDisc | eSmart | eFatal, "Segsets present")
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| H A D | rna_names.cpp | 77 DISCREPANCY_CASE(RRNA_NAME_CONFLICTS, FEAT, eDisc | eSubmitter | eSmart | eFatal, "rRNA name confli…
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| H A D | feature_tests.cpp | 68 DISCREPANCY_CASE(PSEUDO_MISMATCH, FEAT, eDisc | eOncaller | eSubmitter | eSmart | eFatal, "Pseudo M…
102 DISCREPANCY_CASE(SHORT_RRNA, FEAT, eDisc | eOncaller | eSubmitter | eSmart | eFatal, "Short rRNA Fe…
141 DISCREPANCY_CASE(RBS_WITHOUT_GENE, FEAT, eOncaller | eFatal, "RBS features should have an overlappi…
185 DISCREPANCY_CASE(MISSING_GENES, FEAT, eDisc | eSubmitter | eSmart | eFatal, "Missing Genes")
491 …_PARTIAL_NONEXTENDABLE_PROBLEMS, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Find partial fea…
560 DISCREPANCY_CASE(PARTIAL_PROBLEMS, SEQUENCE, eDisc | eOncaller | eSubmitter | eSmart | eFatal, "Fin…
710 DISCREPANCY_CASE(EUKARYOTE_SHOULD_HAVE_MRNA, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Eukar…
1043 DISCREPANCY_CASE(MICROSATELLITE_REPEAT_TYPE, FEAT, eOncaller | eFatal, "Microsatellites must have r…
1313 DISCREPANCY_CASE(RIBOSOMAL_SLIPPAGE, FEAT, eDisc | eSmart | eFatal, " Only a select number of prote…
2268 …ULD_HAVE_PROTEIN_TRANSCRIPT_IDS, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "mRNA should have…
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| H A D | pub_tests.cpp | 221 DISCREPANCY_CASE(TITLE_AUTHOR_CONFLICT, DESC, eDisc | eOncaller | eSmart | eFatal, "Publications wi…
379 …WITHOUT_TITLE, PUBDESC, eDisc | eOncaller | eSubmitter | eSmart | eBig | eFatal, "Unpublished pubs…
436 DISCREPANCY_CASE(MISSING_AFFIL, PUBDESC, eDisc | eOncaller | eFatal, "Missing affiliation")
498 DISCREPANCY_CASE(CITSUBAFFIL_CONFLICT, AUTHORS, eDisc | eOncaller | eSmart | eFatal, "All Cit-subs …
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| H A D | overlapping_features.cpp | 240 DISCREPANCY_CASE(RNA_CDS_OVERLAP, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "CDS RNA Overlap")
308 DISCREPANCY_CASE(OVERLAPPING_RRNAS, SEQUENCE, eDisc | eSubmitter | eSmart | eFatal, "Overlapping rR…
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| H A D | sesame_street.cpp | 108 DISCREPANCY_CASE(SOURCE_QUALS, BIOSRC, eDisc | eOncaller | eSubmitter | eSmart | eBig | eFatal, "So…
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| H A D | suspect_product_names.cpp | 230 …CT_PRODUCT_NAMES, FEAT, eDisc | eOncaller | eSubmitter | eSmart | eTSA | eFatal, "Suspect Product …
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| H A D | biosource_tests.cpp | 88 DISCREPANCY_CASE(MAP_CHROMOSOME_CONFLICT, BIOSRC, eDisc | eOncaller | eSmart | eFatal, "Eukaryotic …
290 DISCREPANCY_CASE(UNCULTURED_NOTES, BIOSRC, eOncaller | eFatal, "Uncultured Notes")
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| H A D | sequence_tests.cpp | 116 DISCREPANCY_CASE(TERMINAL_NS, SEQUENCE, eDisc | eSmart | eBig | eFatal, "Ns at end of sequences")
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/netschedule/ |
| H A D | background_host.hpp | 51 eFatal enumerator
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| H A D | ns_server_misc.cpp | 56 if (severity == CBackgroundHost::eFatal) in ReportError()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/pubseq_gateway/impl/cassandra/ |
| H A D | cass_exception.hpp | 69 eFatal, enumerator
110 case eFatal: return "eFatal"; in GetErrCodeString()
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| H A D | cass_driver.hpp | 765 RAISE_DB_ERROR(eFatal, "Cassandra connection is not established"); in CCassQuery()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/corelib/ |
| H A D | ncbi_toolkit.hpp | 107 eFatal, ///< Fatal error enumerator
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/corelib/ |
| H A D | ncbi_toolkit.hpp | 107 eFatal, ///< Fatal error enumerator
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/pubseq_gateway/cassandra/test/unit/ |
| H A D | fullscan_runner.cpp | 149 NCBI_THROW(CCassandraException, eFatal, "Finalize may throw"); in ReadRow()
162 NCBI_THROW(CCassandraException, eFatal, "Finalize may throw"); in Finalize()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/pubseq_gateway/cassandra/fullscan/ |
| H A D | runner.cpp | 190 NCBI_THROW(CCassandraException, eFatal, in Execute()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/misc/discrepancy/ |
| H A D | discrepancy.hpp | 207 eFatal = 64, enumerator
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/discrepancy_report/ |
| H A D | asndisc.cpp | 438 AllTests = GetDiscrepancyNames(eFatal); in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/pubseq_gateway/cassandra/ |
| H A D | cass_driver.cpp | 581 NCBI_THROW(CCassandraException, eFatal, "Cluster metadata is not resolved"); in GetPartitionKeyColumnNames()
|