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Searched refs:eFractionCommonKmersLocal (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/cobalt/demo/
H A Dclusterer_app.cpp169 TKMethods::EDistMeasures dist_method = TKMethods::eFractionCommonKmersLocal; in x_RunBinary()
171 dist_method = TKMethods::eFractionCommonKmersLocal; in x_RunBinary()
254 TKMethods::EDistMeasures dist_method = TKMethods::eFractionCommonKmersLocal; in x_RunSparse()
256 dist_method = TKMethods::eFractionCommonKmersLocal; in x_RunSparse()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/cobalt/unit_test/
H A Dkmer_unit_test.cpp229 TKMethods::eFractionCommonKmersLocal, dmat); in BOOST_AUTO_TEST_CASE()
248 TKMethods::eFractionCommonKmersLocal, dmat); in BOOST_AUTO_TEST_CASE()
266 TKMethods::eFractionCommonKmersLocal, dmat); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/cobalt/
H A Dkmercounts.hpp435 eFractionCommonKmersLocal enumerator
601 case eFractionCommonKmersLocal: in ComputeDistMatrix()
660 if (dist_method == eFractionCommonKmersLocal) { in ComputeDistLinks()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/cobalt/
H A Doptions.cpp94 && m_ClustDistMeasure != TKMethods::eFractionCommonKmersLocal) { in Validate()