| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/ |
| H A D | omssaapp.cpp | 190 CArgDescriptions::eInteger, "1"); in Init()
202 CArgDescriptions::eInteger, "2"); in Init()
205 CArgDescriptions::eInteger, "2"); in Init()
214 CArgDescriptions::eInteger, "6"); in Init()
217 CArgDescriptions::eInteger, "2"); in Init()
220 CArgDescriptions::eInteger, "4"); in Init()
238 CArgDescriptions::eInteger, in Init()
242 CArgDescriptions::eInteger, in Init()
246 CArgDescriptions::eInteger, in Init()
254 CArgDescriptions::eInteger, in Init()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/winmask/demo/ |
| H A D | win_mask_app.cpp | 92 CArgDescriptions::eInteger, "19" ); in Init()
94 CArgDescriptions::eInteger, "1" ); in Init()
96 CArgDescriptions::eInteger, "1" ); in Init()
99 CArgDescriptions::eInteger, "50" ); in Init()
108 CArgDescriptions::eInteger ); in Init()
112 CArgDescriptions::eInteger ); in Init()
116 CArgDescriptions::eInteger ); in Init()
134 CArgDescriptions::eInteger, "8" ); in Init()
141 CArgDescriptions::eInteger, "1" ); in Init()
147 CArgDescriptions::eInteger, "0" ); in Init()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/splign/ |
| H A D | splign_cmdargs.cpp | 62 CArgDescriptions::eInteger); in SetupArgDescriptions()
69 CArgDescriptions::eInteger); in SetupArgDescriptions()
76 CArgDescriptions::eInteger); in SetupArgDescriptions()
82 CArgDescriptions::eInteger); in SetupArgDescriptions()
89 CArgDescriptions::eInteger); in SetupArgDescriptions()
96 CArgDescriptions::eInteger); in SetupArgDescriptions()
103 CArgDescriptions::eInteger); in SetupArgDescriptions()
110 CArgDescriptions::eInteger); in SetupArgDescriptions()
145 CArgDescriptions::eInteger, in SetupArgDescriptions()
169 CArgDescriptions::eInteger, in SetupArgDescriptions()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/proteinkmer/demo/ |
| H A D | mkkblastindex.cpp | 73 CArgDescriptions::eInteger, in Init()
77 "kmer size", CArgDescriptions::eInteger, "5"); in Init()
81 CArgDescriptions::eInteger, "2"); in Init()
85 CArgDescriptions::eInteger, "1"); in Init()
89 CArgDescriptions::eInteger, "32"); in Init()
93 CArgDescriptions::eInteger, "0"); in Init()
97 CArgDescriptions::eInteger, "3"); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/test/ |
| H A D | test_thread_pool_old.cpp | 69 CArgDescriptions::eInteger, "3"); in Init()
72 CArgDescriptions::eInteger, "5"); in Init()
74 CArgDescriptions::eInteger, "10"); in Init()
77 CArgDescriptions::eInteger, "2"); in Init()
80 CArgDescriptions::eInteger, "30"); in Init()
83 CArgDescriptions::eInteger, "5"); in Init()
|
| H A D | test_rangemap.cpp | 308 CArgDescriptions::eInteger, "1"); in Init()
319 CArgDescriptions::eInteger, "10000"); in Init()
322 CArgDescriptions::eInteger, "1000"); in Init()
325 CArgDescriptions::eInteger, "20") in Init()
329 CArgDescriptions::eInteger, "10"); in Init()
332 CArgDescriptions::eInteger, "20"); in Init()
335 CArgDescriptions::eInteger, "1"); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/streamtest/ |
| H A D | streamtest.cpp | 219 CArgDescriptions::eInteger); in Init()
224 CArgDescriptions::eInteger); in Init()
232 CArgDescriptions::eInteger); in Init()
237 CArgDescriptions::eInteger); in Init()
242 CArgDescriptions::eInteger); in Init()
255 CArgDescriptions::eInteger, in Init()
261 CArgDescriptions::eInteger, in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/bma_refine/bma_refiner_app/ |
| H A D | bma_refiner.cpp | 178 …"integer", "extension parameter for loop-length cutoff in block aligner", argDescr->eInteger, "0"); in Init()
180 …", "integer", "cutoff parameter for loop-length cutoff in block aligner", argDescr->eInteger, "0"); in Init()
186 …tprint and can be used with -fs; overrides any N-terminal extension from -ex", argDescr->eInteger); in Init()
192 …"integer", "first block to realign (post-IBM, from 1); overridden if -ab set", argDescr->eInteger); in Init()
194 … "integer", "last block to realign (post-IBM, from 1); overridden if -ab set", argDescr->eInteger); in Init()
197 …ocks); master == row 1 is always excluded\n(See 'extras_are_blocks' flag.)\n", argDescr->eInteger); in Init()
215 …, "integer", "number of output CDs; save CDs from the top 'nout' trials", argDescr->eInteger, "1"); in Init()
222 …"seed", "positive_integer", "specify the seed for random number generation\n", argDescr->eInteger); in Init()
239 …on events);\nblocks that start smaller than min size are not truncated.", argDescr->eInteger, "1"); in Init()
255 … be_score = 'median', '3.3.3', value column median must equal or exceed", argDescr->eInteger, "3"); in Init()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/winmask/ |
| H A D | win_mask_config.cpp | 85 CArgDescriptions::eInteger, "1536" ); in AddWinMaskArgs()
91 CArgDescriptions::eInteger ); in AddWinMaskArgs()
94 CArgDescriptions::eInteger ); in AddWinMaskArgs()
100 CArgDescriptions::eInteger ); in AddWinMaskArgs()
103 CArgDescriptions::eInteger ); in AddWinMaskArgs()
106 CArgDescriptions::eInteger ); in AddWinMaskArgs()
110 CArgDescriptions::eInteger ); in AddWinMaskArgs()
114 CArgDescriptions::eInteger ); in AddWinMaskArgs()
139 CArgDescriptions::eInteger ); in AddWinMaskArgs()
142 CArgDescriptions::eInteger ); in AddWinMaskArgs()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/winmask/ |
| H A D | win_mask_config.cpp | 85 CArgDescriptions::eInteger, "1536" ); in AddWinMaskArgs()
91 CArgDescriptions::eInteger ); in AddWinMaskArgs()
94 CArgDescriptions::eInteger ); in AddWinMaskArgs()
100 CArgDescriptions::eInteger ); in AddWinMaskArgs()
103 CArgDescriptions::eInteger ); in AddWinMaskArgs()
106 CArgDescriptions::eInteger ); in AddWinMaskArgs()
110 CArgDescriptions::eInteger ); in AddWinMaskArgs()
114 CArgDescriptions::eInteger ); in AddWinMaskArgs()
139 CArgDescriptions::eInteger ); in AddWinMaskArgs()
142 CArgDescriptions::eInteger ); in AddWinMaskArgs()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/connect/test/ |
| H A D | test_threaded_client.cpp | 128 CArgDescriptions::eInteger); in Init()
132 CArgDescriptions::eInteger, "500"); in Init()
135 CArgDescriptions::eInteger, "5"); in Init()
139 CArgDescriptions::eInteger, "10"); in Init()
142 CArgDescriptions::eInteger, "100"); in Init()
|
| H A D | test_threaded_server.cpp | 101 CArgDescriptions::eInteger); in Init()
105 CArgDescriptions::eInteger, "5"); in Init()
109 CArgDescriptions::eInteger, "10"); in Init()
112 CArgDescriptions::eInteger, "20"); in Init()
|
| H A D | test_server.cpp | 320 CArgDescriptions::eInteger, "5"); in Init()
324 CArgDescriptions::eInteger, "10"); in Init()
328 CArgDescriptions::eInteger, "5"); in Init()
332 CArgDescriptions::eInteger, "10"); in Init()
336 CArgDescriptions::eInteger, "100"); in Init()
349 CArgDescriptions::eInteger, "1000"); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/image/demo/ |
| H A D | sub_image.cpp | 78 CArgDescriptions::eInteger); in Init()
80 CArgDescriptions::eInteger); in Init()
82 CArgDescriptions::eInteger); in Init()
84 CArgDescriptions::eInteger); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/prosplign/ |
| H A D | prosplign.cpp | 117 CArgDescriptions::eInteger, in SetupArgDescriptions()
123 CArgDescriptions::eInteger, in SetupArgDescriptions()
129 CArgDescriptions::eInteger, in SetupArgDescriptions()
135 CArgDescriptions::eInteger, in SetupArgDescriptions()
141 CArgDescriptions::eInteger, in SetupArgDescriptions()
147 CArgDescriptions::eInteger, in SetupArgDescriptions()
153 CArgDescriptions::eInteger, in SetupArgDescriptions()
159 CArgDescriptions::eInteger, in SetupArgDescriptions()
165 CArgDescriptions::eInteger, in SetupArgDescriptions()
235 CArgDescriptions::eInteger, in SetupArgDescriptions()
[all …]
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
| H A D | magicblast_args.cpp | 84 CArgDescriptions::eInteger, in SetArgumentDescriptions()
94 CArgDescriptions::eInteger, "0"); in SetArgumentDescriptions()
99 CArgDescriptions::eInteger, "4"); in SetArgumentDescriptions()
154 CArgDescriptions::eInteger, "-4"); in SetArgumentDescriptions()
170 CArgDescriptions::eInteger, in SetArgumentDescriptions()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
| H A D | magicblast_args.cpp | 84 CArgDescriptions::eInteger, in SetArgumentDescriptions()
94 CArgDescriptions::eInteger, "0"); in SetArgumentDescriptions()
99 CArgDescriptions::eInteger, "4"); in SetArgumentDescriptions()
154 CArgDescriptions::eInteger, "-4"); in SetArgumentDescriptions()
170 CArgDescriptions::eInteger, in SetArgumentDescriptions()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/demo/ |
| H A D | cpgdemo.cpp | 62 CArgDescriptions::eInteger, "50"); in Init()
65 CArgDescriptions::eInteger, "60"); in Init()
68 CArgDescriptions::eInteger, "200"); in Init()
71 CArgDescriptions::eInteger, "500"); in Init()
75 CArgDescriptions::eInteger); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/demo/ |
| H A D | alnvwrapp.cpp | 140 CArgDescriptions::eInteger); in Init()
162 CArgDescriptions::eInteger); in Init()
167 CArgDescriptions::eInteger, "60"); in Init()
172 CArgDescriptions::eInteger, "0"); in Init()
177 CArgDescriptions::eInteger, "0"); in Init()
182 CArgDescriptions::eInteger, "1"); in Init()
187 CArgDescriptions::eInteger, "0"); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/general/test/ |
| H A D | test_date.cpp | 59 arg_desc->AddKey("Y", "year", "year number", CArgDescriptions::eInteger); in Init()
61 CArgDescriptions::eInteger); in Init()
63 CArgDescriptions::eInteger); in Init()
|
| /dports/devel/py-pyxb/PyXB-1.2.6/tests/drivers/ |
| H A D | test-enumeration.py | 35 self.assertRaises(pyxb.SimpleTypeValueError, eInteger, 4)
36 self.assertRaises(pyxb.SimpleTypeValueError, eInteger, '4')
38 …self.assertRaises(pyxb.SimpleTypeValueError, eInteger) # Value defaults to zero, not in enumeration
39 self.assertEqual(3, eInteger(3))
41 self.assertEqual(21, eInteger(21))
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/server/test/utils/ |
| H A D | cache_test.cpp | 50 arg_desc->AddPositional("users", "number of users", CArgDescriptions::eInteger); in Init()
51 …_desc->AddPositional("threads_per_user", "number of threads per user", CArgDescriptions::eInteger); in Init()
52 … arg_desc->AddPositional("count", "number of cache.add() per thread", CArgDescriptions::eInteger); in Init()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/client/ |
| H A D | psg_client_app.cpp | 162 …"io-threads", "THREADS_NUM", "Number of I/O threads", CArgDescriptions::eInteger, CArgDescriptions… in s_InitPsgOptions()
163 … of requests to submit consecutively per I/O thread", CArgDescriptions::eInteger, CArgDescriptions… in s_InitPsgOptions()
164 …Maximum number of concurrent streams per I/O thread", CArgDescriptions::eInteger, CArgDescriptions… in s_InitPsgOptions()
166 …dOptionalKey("timeout", "SECONDS", "Set request timeout (in seconds)", CArgDescriptions::eInteger); in s_InitPsgOptions()
252 …faultKey("user-threads", "THREADS_NUM", "Number of user threads", CArgDescriptions::eInteger, "1"); in s_InitRequest()
275 arg_desc.AddPositional("START_TIME", "Start time (time_t)", CArgDescriptions::eInteger); in s_InitRequest()
276 arg_desc.AddPositional("DURATION", "Duration (seconds)", CArgDescriptions::eInteger); in s_InitRequest()
277 arg_desc.AddPositional("USER_THREADS", "Number of user threads", CArgDescriptions::eInteger); in s_InitRequest()
278 arg_desc.AddPositional("DOWNLOAD_SIZE", "Download size", CArgDescriptions::eInteger); in s_InitRequest()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/gene_info_reader/demo/ |
| H A D | gene_info_reader_app.cpp | 131 CArgDescriptions::eInteger, in Init()
137 CArgDescriptions::eInteger, in Init()
143 CArgDescriptions::eInteger, in Init()
149 CArgDescriptions::eInteger, in Init()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/gene_info_reader/demo/ |
| H A D | gene_info_reader_app.cpp | 131 CArgDescriptions::eInteger, in Init()
137 CArgDescriptions::eInteger, in Init()
143 CArgDescriptions::eInteger, in Init()
149 CArgDescriptions::eInteger, in Init()
|