| /dports/math/cgal/CGAL-5.3/include/CGAL/Polygon_mesh_processing/ |
| H A D | remesh.h | 219 ECMap ecmap = choose_parameter(get_parameter(np, internal_np::edge_is_constrained), in isotropic_remeshing() local
238 internal::Connected_components_pmap<PM, FIMap>(faces, pmesh, ecmap, fimap, in isotropic_remeshing()
255 internal::constraints_are_short_enough(pmesh, ecmap, vpmap, fpmap, high), in isotropic_remeshing()
269 remesher(pmesh, vpmap, gt, protect, ecmap, vcmap, fpmap, fimap, need_aabb_tree); in isotropic_remeshing()
416 ECMap ecmap = choose_parameter(get_parameter(np, internal_np::edge_is_constrained), in split_long_edges() local
424 remesher(pmesh, vpmap, gt, false/*protect constraints*/, ecmap, in split_long_edges()
426 … internal::Connected_components_pmap<PM, FIMap>(faces(pmesh), pmesh, ecmap, fimap, false), in split_long_edges()
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| H A D | smooth_mesh.h | 220 ECMap ecmap = choose_parameter(get_parameter(np, internal_np::edge_is_constrained), in smooth_mesh() local
231 if(get(ecmap, edge(h, tmesh))) in smooth_mesh()
263 Delaunay_flipper delaunay_flipper(tmesh, vpmap, ecmap, gt); in smooth_mesh()
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| H A D | connected_components.h | 142 EdgeConstraintMap ecmap in connected_component() local
159 if(! get(ecmap, edge(hd, pmesh))){ in connected_component()
234 EdgeConstraintMap ecmap in connected_components() local
257 if ( get(ecmap, edge(h, pmesh)) ) continue; in connected_components()
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| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | Inspect.h | 131 cout << "#[inspect] number of equivalence classes = " << index.ecmap.size() << endl; in InspectIndex()
134 if (index.ecmap.size() != index.ecmapinv.size()) { in InspectIndex()
135 cout << "Error: sizes do not match. ecmap.size = " << index.ecmap.size() in InspectIndex()
152 for (int ec = 0; ec < index.ecmap.size(); ec++) { in InspectIndex()
153 const vector<int>& v = index.ecmap[ec]; in InspectIndex()
196 if (eiv.second < 0 || eiv.second >= index.ecmap.size()) { in InspectIndex()
202 auto &v = index.ecmap[eiv.second]; in InspectIndex()
227 ++kmhisto[index.ecmap[index.dbGraph.ecs[id]].size()]; in InspectIndex()
366 std::vector<std::unordered_map<int, std::vector<ECStruct>>> ec_chrom(index.ecmap.size()); in InspectIndex()
429 for (const auto& t : index.ecmap[ec]) { in InspectIndex()
[all …]
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| H A D | Merge.cpp | 132 index_ec = index.ecmap.size(); in MergeBatchDirectories()
133 index.ecmap.push_back(c); in MergeBatchDirectories()
153 for (int j = 0; j < index.ecmap.size(); j++) { in MergeBatchDirectories()
156 const auto &v = index.ecmap[j]; in MergeBatchDirectories()
199 int sNumEcs = index.ecmap.size(); in MergeBatchDirectories()
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| H A D | weights.cpp | 222 const EcMap& ecmap, in calc_weights() argument
230 WeightMap weights(ecmap.size()); in calc_weights()
232 for (size_t ec = 0; ec < ecmap.size(); ec++) { in calc_weights()
233 auto& v = ecmap[ec]; in calc_weights()
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| H A D | MinCollector.cpp | 106 index.ecmap.push_back(u); in increaseCount()
137 assert(ec >= 0 && ec <= index.ecmap.size()); in decreaseCount()
164 std::vector<int> u = index.ecmap[ec]; in intersectECs()
251 for (int i = 0; i < index.ecmap.size(); i++) { in write()
254 const auto &v = index.ecmap[i]; in write()
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| H A D | PlaintextWriter.cpp | 159 writeSparseBatchMatrix(countsfilename, counts, index.ecmap.size()); in writeBatchMatrix()
192 for (int i = 0; i < index.ecmap.size(); i++) { in writeECList()
195 const auto &v = index.ecmap[i]; in writeECList()
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| H A D | KmerIndex.cpp | 172 ecmap.push_back(single); in BuildTranscripts()
405 ecmap.push_back(u); in BuildEquivalenceClasses()
667 tmp_size = ecmap.size(); in write()
672 for (int ec = 0; ec < ecmap.size(); ec++) { in write()
674 auto& v = ecmap[ec]; in write()
869 ecmap.resize(ecmap_size); in load()
888 ecmap[tmp_id] = tmp_vec; in load()
1339 if (ec < ecmap.size()) { in intersect()
1342 auto& u = ecmap[ec]; in intersect()
1410 ecmap.resize(0); in clear()
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| H A D | Fusion.hpp | 64 std::vector<int> u = index.ecmap[ec]; in simpleIntersect()
186 su.insert(index.ecmap[ec].begin(), index.ecmap[ec].end()); in checkUnionIntersection()
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| H A D | weights.h | 38 const EcMap& ecmap,
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| H A D | MinCollector.h | 21 counts(index.ecmap.size(), 0), in MinCollector()
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| H A D | KmerIndex.h | 135 EcMap ecmap; member
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| H A D | EMAlgorithm.h | 34 ecmap_(index.ecmap), in EMAlgorithm()
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| H A D | ProcessReads.cpp | 313 index.ecmap.push_back(u); in processReads()
387 int ecsize = index.ecmap.size(); in processReads()
389 if (ec != -1 && ecsize < index.ecmap.size()) { in processReads()
424 int ecsize = index.ecmap.size(); in processReads()
426 if (ec != -1 && ecsize < index.ecmap.size()) { in processReads()
1639 u = index.ecmap[ec]; // copy, but meh in processBufferTrans()
2043 u = index.ecmap[ec]; // copy, but meh in processBufferGenome()
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| H A D | main.cpp | 2357 collection.counts.assign(index.ecmap.size(), 0); in main()
2433 writeSparseBatchMatrix(tccfilename, MP.batchCounts, index.ecmap.size()); in main()
2464 for (auto t : index.ecmap[ec]) { in main()
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| /dports/math/cgal/CGAL-5.3/include/CGAL/ |
| H A D | tetrahedral_remeshing.h | 233 ECMap ecmap = choose_parameter(get_parameter(np, internal_np::edge_is_constrained), in tetrahedral_isotropic_remeshing() local
268 , ecmap, fcmap in tetrahedral_isotropic_remeshing()
428 ECMap ecmap = choose_parameter(get_parameter(np, internal_np::edge_is_constrained), in tetrahedral_isotropic_remeshing() local
466 , ecmap, fcmap in tetrahedral_isotropic_remeshing()
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| /dports/math/cgal/CGAL-5.3/include/CGAL/Tetrahedral_remeshing/internal/ |
| H A D | tetrahedral_adaptive_remeshing_impl.h | 127 , EdgeIsConstrainedMap ecmap in Adaptive_remesher() argument
143 init_c3t3(ecmap, fcmap); in Adaptive_remesher()
156 , EdgeIsConstrainedMap ecmap in Adaptive_remesher() argument
172 init_c3t3(ecmap, fcmap); in Adaptive_remesher()
396 void init_c3t3(const EdgeIsConstrainedMap& ecmap, in init_c3t3() argument
484 if (get(ecmap, CGAL::Tetrahedral_remeshing::make_vertex_pair<Tr>(e)) in init_c3t3()
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| /dports/science/lammps/lammps-stable_29Sep2021/src/MOLECULE/ |
| H A D | fix_cmap.h | 84 double ecmap; variable
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| H A D | fix_cmap.cpp | 341 ecmap = 0.0; in post_force()
485 if (i1 < nlocal) ecmap += engfraction; in post_force()
486 if (i2 < nlocal) ecmap += engfraction; in post_force()
487 if (i3 < nlocal) ecmap += engfraction; in post_force()
488 if (i4 < nlocal) ecmap += engfraction; in post_force()
489 if (i5 < nlocal) ecmap += engfraction; in post_force()
624 MPI_Allreduce(&ecmap,&all,1,MPI_DOUBLE,MPI_SUM,world); in compute_scalar()
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| /dports/x11-wm/e16/e16-1.0.24/src/ |
| H A D | icccm.c | 329 EX_Colormap ecmap, dcmap, ccmap; in ICCCM_Cmap() local
334 ecmap = Mode.current_cmap; in ICCCM_Cmap()
339 if (ecmap == dcmap) in ICCCM_Cmap()
347 if (ccmap == ecmap || EoGetWin(ewin)->argb) in ICCCM_Cmap()
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| /dports/math/cgal/CGAL-5.3/include/CGAL/Polygon_mesh_processing/internal/Isotropic_remeshing/ |
| H A D | remesh_impl.h | 183 , EdgeIsConstrainedMap ecmap
199 PMP::parameters::edge_is_constrained_map(ecmap)
209 make_OR_property_map(ecmap
237 EdgeConstraintMap ecmap, in constraints_are_short_enough() argument
249 get(ecmap, e) || in constraints_are_short_enough()
310 , EdgeIsConstrainedMap ecmap
324 , ecmap_(ecmap) in mesh_()
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| /dports/math/cgal/CGAL-5.3/include/CGAL/Polygon_mesh_processing/internal/Smoothing/ |
| H A D | mesh_smoothing_impl.h | 79 const ECMap ecmap, in Delaunay_edge_flipper() argument
81 : mesh_(mesh), vpmap_(vpmap), ecmap_(ecmap), traits_(traits) in Delaunay_edge_flipper()
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