Searched refs:editedalign (Results 1 – 2 of 2) sorted by relevance
639 CAlignModel editedalign(editedmodel, editedamap); in RemoveNotSupportedIntronsFromTranscript() local640 editedalign.SetTargetId(*align.GetTargetId()); in RemoveNotSupportedIntronsFromTranscript()641 align = editedalign; in RemoveNotSupportedIntronsFromTranscript()945 CAlignModel editedalign(editedmodel, editedamap); in CleanSelfTranscript() local946 editedalign.SetTargetId(*align.GetTargetId()); in CleanSelfTranscript()948 align = editedalign; in CleanSelfTranscript()1465 if(editedalign.Exons().size() > align.Exons().size()) { in FilterAlignments()1466 m_aligns_for_filtering_only.push_front(editedalign); in FilterAlignments()2229 CAlignModel editedalign(editedmodel, editedamap); in FillGapsInAlignmentAndAddToGenomicGaps() local2230 editedalign.SetTargetId(*align.GetTargetId()); in FillGapsInAlignmentAndAddToGenomicGaps()[all …]
7854 CAlignModel editedalign(editedmodel, editedamap); in MapOneModelToEditedContig() local7861 acds.Clip(editedalign.TranscriptLimits()); in MapOneModelToEditedContig()7863 editedalign.SetCdsInfo(acds.MapFromEditedToOrig(editedamap)); in MapOneModelToEditedContig()7866 return editedalign; in MapOneModelToEditedContig()