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/dports/biology/gcta/gcta_1.26.0_src/
H A Dgcta.h258 void em_reml(eigenMatrix &P, eigenVector &Py, eigenVector &prev_varcmp, eigenVector &varcmp);
271 …void calcu_rg(eigenVector &varcmp, eigenMatrix &Hi, eigenVector &rg, eigenVector &rg_var, vector<s…
310 … slct_entry(vector<int> &slct, vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect…
311 void slct_stay(vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVector &pJ);
314 … void massoc_joint(const vector<int> &indx, eigenVector &bJ, eigenVector &bJ_se, eigenVector &pJ);
322 …void massoc_cond_output(vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVector &pC);
386 …ojo_slct_output(bool joint_only, vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVect…
387 … ecojo_slct(vector<int> &slct, vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect…
389 void ecojo_slct_stay(vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVector &pJ);
390 void ecojo_joint(const vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVector &pJ);
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H A Dejma.cpp49 eigenVector d(_e_include.size()); in calcu_eR()
163 eigenVector bC, bC_se, pC; in run_ecojo_slct()
183 eigenVector bJ, bJ_se, pJ; in run_ecojo_slct()
192 …ojo_slct_output(bool joint_only, vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVect… in ecojo_slct_output()
208 …:ecojo_slct(vector<int> &slct, vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect… in ecojo_slct()
240 …_slct_entry(vector<int> &slct, vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect… in ecojo_slct_entry()
291 void gcta::ecojo_slct_stay(vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVector &pJ) in ecojo_slct_stay()
306 void gcta::ecojo_joint(const vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVector &p… in ecojo_joint()
309 eigenVector b(size), n(size); in ecojo_joint()
328 …const vector<int> &slct, const vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect… in ecojo_cond()
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H A Djoint_meta.cpp140 eigenVector x; in init_massoc()
186 eigenVector bC, bC_se, pC; in run_massoc_slct()
253 …soc_slct_output(bool joint_only, vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVect… in massoc_slct_output()
288 void gcta::massoc_cond_output(vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVector… in massoc_cond_output()
339 …:slct_entry(vector<int> &slct, vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect… in slct_entry()
358 void gcta::slct_stay(vector<int> &slct, eigenVector &bJ, eigenVector &bJ_se, eigenVector &pJ) { in slct_stay()
396 void gcta::massoc_joint(const vector<int> &indx, eigenVector &bJ, eigenVector &bJ_se, eigenVector &… in massoc_joint()
403 eigenVector b(n); in massoc_joint()
426 …const vector<int> &slct, const vector<int> &remain, eigenVector &bC, eigenVector &bC_se, eigenVect… in massoc_cond()
434 eigenVector b(n), se(n); in massoc_cond()
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H A Dld.cpp285 …eigenVector mean_rsq = eigenVector::Zero(m), snp_num = eigenVector::Zero(m), max_rsq = eigenVector… in calcu_mean_rsq()
387 … eigenVector rsq_size(size), mean_rsq_sub(size), max_rsq_sub = eigenVector::Constant(size, -1.0); in calcu_ld_blk()
445 …mit, MatrixXf &X_sub, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigen… in calcu_ld_blk_split()
636 eigenVector rsq_size = eigenVector::Zero(size); in calcu_ld_blk_multiSet()
637 eigenVector mean_rsq_sub = eigenVector::Zero(size); in calcu_ld_blk_multiSet()
638 eigenVector max_rsq_sub = eigenVector::Constant(size, -1.0); in calcu_ld_blk_multiSet()
706 eigenVector rsq_size_sub = eigenVector::Zero(size_sub); in calcu_ld_blk_split_multiSet()
707 eigenVector mean_rsq_sub_sub = eigenVector::Zero(size_sub); in calcu_ld_blk_split_multiSet()
708 eigenVector max_rsq_sub_sub = eigenVector::Constant(size_sub, -1.0); in calcu_ld_blk_split_multiSet()
799 …eigenVector mrsq_buf = eigenVector::Zero(m), snp_num_buf = eigenVector::Zero(m), max_rsq_buf = eig… in ld_seg()
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H A Dbivar_reml.cpp92 _y = eigenVector::Zero(_n); in fit_bivar_reml()
112 eigenVector y1_tmp = (_y.segment(0, n1)).array() - (_y.segment(0, n1)).mean(); in fit_bivar_reml()
131 eigenVector y1 = _y.segment(0, n1), y2 = _y.segment(n1, n2); in fit_bivar_reml()
323 void gcta::constrain_rg(eigenVector &varcmp) { in constrain_rg()
336 eigenVector eval = eigensolver.eigenvalues(); in constrain_rg()
351 void gcta::calcu_rg(eigenVector &varcmp, eigenMatrix &Hi, eigenVector &rg, eigenVector &rg_var, vec… in calcu_rg()
355 rg = eigenVector::Zero(_bivar_pos[0].size() - 1); in calcu_rg()
382 double gcta::lgL_fix_rg(eigenVector &prev_varcmp, bool no_constrain) { in lgL_fix_rg()
406 eigenVector Py(_n); in lgL_fix_rg()
407 eigenVector varcmp(_r_indx.size()); in lgL_fix_rg()
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H A Dest_hsq.cpp643 eigenVector Py(_n), varcmp; in reml()
717 eigenVector rg, rg_var; in reml()
875 eigenVector Py(_n); in lgL_reduce_mdl()
876 eigenVector varcmp; in lgL_reduce_mdl()
1292 void gcta::reml_equation(eigenMatrix &P, eigenMatrix &Hi, eigenVector &Py, eigenVector &varcmp) in reml_equation()
1300 eigenVector R(_r_indx.size()); in reml_equation()
1314 …d gcta::ai_reml(eigenMatrix &P, eigenMatrix &Hi, eigenVector &Py, eigenVector &prev_varcmp, eigenV… in ai_reml()
1319 eigenVector cvec(_n); in ai_reml()
1337 eigenVector tr_PA; in ai_reml()
1359 void gcta::em_reml(eigenMatrix &P, eigenVector &Py, eigenVector &prev_varcmp, eigenVector &varcmp) in em_reml()
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H A Dmlm_assoc.cpp196 eigenVector y_buf=_y; in mlma()
215 eigenVector beta, se, pval; in mlma()
235 …, float *geno_mkl, unsigned long n, unsigned long m, eigenVector &beta, eigenVector &se, eigenVect… in mlma_calcu_stat()
250 se=eigenVector::Zero(m); in mlma_calcu_stat()
251 pval=eigenVector::Constant(m,2); in mlma_calcu_stat()
284 …, float *geno_mkl, unsigned long n, unsigned long m, eigenVector &beta, eigenVector &se, eigenVect… in mlma_calcu_stat_covar()
306 se=eigenVector::Zero(m); in mlma_calcu_stat_covar()
307 pval=eigenVector::Constant(m,2); in mlma_calcu_stat_covar()
443 eigenVector y_buf=_y; in mlma_loco()
445 vector<eigenVector> beta(chrs.size()), se(chrs.size()), pval(chrs.size()); in mlma_loco()
H A Dedata.cpp88 eigenVector mu(_e_include.size()), nonmiss(_e_include.size()); in std_probe()
116 eigenVector sd(_e_include.size()); in std_probe()
141 eigenVector mu(n), nonmiss(n); in std_probe_ind()
169 eigenVector sd(n); in std_probe_ind()
220 eigenVector nonmiss(m); in make_erm()
228 eigenVector var(m); in make_erm()
250 eigenVector ssx(n); in make_erm()
H A Dreml_within_family.cpp59 bool gcta::calcu_Vi_within_family(eigenMatrix &Vi, eigenVector &prev_varcmp, double &logdet, int &i… in calcu_Vi_within_family()
67 Vi.diagonal()=eigenVector::Constant(_n, 1.0/prev_varcmp[0]); in calcu_Vi_within_family()
H A Dmkl.cpp574 eigenVector mean_rsq = eigenVector::Zero(m); in calcu_mean_rsq_mkl()
575 eigenVector snp_num = eigenVector::Zero(m); in calcu_mean_rsq_mkl()
576 eigenVector max_rsq = eigenVector::Zero(m); in calcu_mean_rsq_mkl()
606 …x, vector<int> &brk_pnt, vector<int> &brk_pnt3, eigenVector &mean_rsq, eigenVector &snp_num, eigen… in calcu_ld_blk_mkl()
H A Dgbat.cpp79 void gcta::gbat_calcu_ld(MatrixXf &X, eigenVector &sumsq_x, int snp1_indx, int snp2_indx, MatrixXf … in gbat_calcu_ld()
179 eigenVector sumsq_x(_include.size()); in gbat()
252 eigenVector vec(size); in gbat_simu_p()
H A Dgrm.cpp48 eigenVector sd_SNP; in make_grm()
176 diag_v = (_grm.diagonal() - eigenVector::Constant(n, diag_m)).squaredNorm() / ((double)n - 1.0); in calcu_grm_var()
182 …for (i = 1; i < n; i++) off_v += (_grm.row(i).segment(0, i) - eigenVector::Constant(i, off_m).tra… in calcu_grm_var()
687 eigenVector inv_eigenval(eigenval_num); in snp_pc_loading()
695 eigenVector x(_n); in snp_pc_loading()
H A Dpopu_genet.cpp218 …eigenVector x(_keep.size()), tmp, n_sub(r), xt_S, p_sub(r), h_sub(r);//Fst(_include.size()), f_al… in Fst()
294 …void gcta::std_XMat_subpopu(string subpopu_file, MatrixXf &X, eigenVector &sd_SNP, bool grm_xchr_f… in std_XMat_subpopu()
321 vector<eigenVector> sd_SNP_sub(popu_num), mu_SNP_sub(popu_num); in std_XMat_subpopu()
/dports/multimedia/opentoonz/opentoonz-1.5.0/toonz/sources/common/tapptools/
H A Dtcolorutils.cpp95 KEYER_FLOAT eigenVector[3]; member in Cluster
146 if (eigenVector[0] * r + eigenVector[1] * g + eigenVector[2] * b <= in split()
147 eigenVector[0] * mean[0] + eigenVector[1] * mean[1] + in split()
242 eigenVector[0] = u11; in chooseLeafToClusterize()
243 eigenVector[1] = u12; in chooseLeafToClusterize()
317 eigenVector[0] = 1.0; in chooseLeafToClusterize()
318 eigenVector[1] = 0.0; in chooseLeafToClusterize()
319 eigenVector[2] = 0.0; in chooseLeafToClusterize()
336 clusterFound->eigenVector[0] = eigenVector[0]; in chooseLeafToClusterize()
337 clusterFound->eigenVector[1] = eigenVector[1]; in chooseLeafToClusterize()
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/dports/science/InsightToolkit/ITK-5.0.1/Modules/Numerics/Eigen/include/
H A DitkEigenAnalysis2DImageFilter.hxx108 auto * eigenVector = dynamic_cast< EigenVectorImageType * >( in GetMaxEigenVector() local
111 if ( eigenVector ) in GetMaxEigenVector()
113 return eigenVector; in GetMaxEigenVector()
208 EigenVectorType eigenVector; in GenerateData() local
227 eigenVector[0] = static_cast< VectorComponentType >( ( -dxy - S ) / 2.0 ); in GenerateData()
228 eigenVector[1] = static_cast< VectorComponentType >( -xy ); in GenerateData()
230 const VectorComponentType norm = eigenVector.GetNorm(); in GenerateData()
233 outputIt3.Set(eigenVector / norm); in GenerateData()
/dports/finance/quantlib/QuantLib-1.20/ql/math/matrixutilities/
H A Dsymmetricschurdecomposition.cpp117 std::vector<Real> eigenVector(size); in SymmetricSchurDecomposition() local
121 eigenVectors_.column_end(col), eigenVector.begin()); in SymmetricSchurDecomposition()
122 temp[col] = std::make_pair(diagonal_[col], eigenVector); in SymmetricSchurDecomposition()
H A Dtqreigendecomposition.cpp122 std::vector<Real> eigenVector(ev_.rows()); in TqrEigenDecomposition() local
126 ev_.column_end(i), eigenVector.begin()); in TqrEigenDecomposition()
127 temp[i] = std::make_pair(d_[i], eigenVector); in TqrEigenDecomposition()
/dports/x11-toolkits/qt5-virtualkeyboard/kde-qtvirtualkeyboard-5.15.2p4/src/plugins/lipi-toolkit/3rdparty/lipi-toolkit/src/reco/shaperec/activedtw/
H A DActiveDTWShapeRecognizer.h1027 …rmation(doubleVector& deformationParameters,doubleVector& eigenValues, double2DVector& eigenVector,
1184 double2DVector& eigenVector,doubleVector& eigenValues);
H A DActiveDTWShapeRecognizer.cpp2552 double2DVector eigenVector; in recognize() local
2601 eigenVector = evalClusterModel.getEigenVectors(); in recognize()
2651 eigenVector.clear(); in recognize()
2962 eigenVector.clear(); in recognize()
5248 if(eigenVector.empty()) in findOptimalDeformation()
5266 if(eigenValues.size() != eigenVector.size()) in findOptimalDeformation()
5301 double2DVector::iterator iEnd = eigenVector.end(); in findOptimalDeformation()
5318 n = eigenVector.size(); in findOptimalDeformation()
5685 eigenVector.assign(rowSize,tempVector); in computeEigenVectorsForLargeDimension()
5705 tempMagnitude += (eigenVector[j][i] * eigenVector[j][i]); in computeEigenVectorsForLargeDimension()
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/dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/queso/src/core/inc/
H A DTeuchosMatrix.h221 …void largestEigen (double& eigenValue, TeuchosVector& eigenVector) const;
224 …void smallestEigen (double& eigenValue, TeuchosVector& eigenVector) const;
H A DGslMatrix.h277 void largestEigen (double& eigenValue, GslVector& eigenVector) const;
280 void smallestEigen (double& eigenValue, GslVector& eigenVector) const;
/dports/science/py-avogadrolibs/avogadrolibs-1.94.0/avogadro/io/
H A Dcjsonformat.cpp659 json eigenVector; in write() local
662 eigenVector.push_back(pos[0]); in write()
663 eigenVector.push_back(pos[1]); in write()
664 eigenVector.push_back(pos[2]); in write()
666 eigenVectors.push_back(eigenVector); in write()
/dports/science/avogadrolibs/avogadrolibs-1.94.0/avogadro/io/
H A Dcjsonformat.cpp659 json eigenVector; in write() local
662 eigenVector.push_back(pos[0]); in write()
663 eigenVector.push_back(pos[1]); in write()
664 eigenVector.push_back(pos[2]); in write()
666 eigenVectors.push_back(eigenVector); in write()
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/queso/src/core/src/
H A DTeuchosMatrix.C1096 TeuchosMatrix::largestEigen(double& eigenValue, TeuchosVector& eigenVector) const in largestEigen() argument
1098 unsigned int n = eigenVector.sizeLocal(); in largestEigen()
1133 eigenVector[i] = copy_m_mat(i,n-1); in largestEigen()
1140 TeuchosMatrix::smallestEigen(double& eigenValue, TeuchosVector& eigenVector) const in smallestEigen() argument
1142 unsigned int n = eigenVector.sizeLocal(); in smallestEigen()
1178 eigenVector[i] = copy_m_mat(i,0); in smallestEigen()
H A DGslMatrix.C1495 GslMatrix::largestEigen(double& eigenValue, GslVector& eigenVector) const in largestEigen() argument
1499 unsigned int n = eigenVector.sizeLocal(); in largestEigen()
1547 eigenVector = z; in largestEigen()
1564 GslMatrix::smallestEigen(double& eigenValue, GslVector& eigenVector) const in smallestEigen() argument
1567 unsigned int n = eigenVector.sizeLocal(); in smallestEigen()
1619 eigenVector = z; in smallestEigen()

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