| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/sv/ |
| H A D | SVClusterEngine.java | 73 …final List<Integer> endPositions = cluster.stream().map(SVCallRecordWithEvidence::getEnd).sorted()… in flattenCluster() local
76 final int medianEnd = endPositions.get(endPositions.size() / 2); in flattenCluster()
100 … newEnd = endPositions.stream().max(Integer::compareTo).orElse(endPositions.get(0)); in flattenCluster()
104 … newEnd = endPositions.stream().min(Integer::compareTo).orElse(endPositions.get(0)); in flattenCluster()
108 newEnd = (int)Math.round(new Mean().evaluate(Doubles.toArray(endPositions))); in flattenCluster()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/thread/ |
| H A D | SpinThread.java | 46 private Lst<P3> endPositions; field in SpinThread
87 endPositions = (Lst<P3>) options[1]; in setManager()
198 } else if (bsAtoms != null && endPositions != null) { in run1()
201 vwr.setAtomCoords(bsAtoms, T.xyz, endPositions); in run1()
203 endPositions = null; in run1()
|
| /dports/finance/R-cran-timeDate/timeDate/R/ |
| H A D | calendar-periods.R | 207 endPositions = unique(timeLastDayInMonth(positions)) functionVar
219 endDates = endPositions[endSeq]
|
| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/langtools/test/tools/javac/6304921/ |
| H A D | TestLog.java | 80 log.setEndPosTable(fo, tree.endPositions); in test()
82 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/langtools/test/tools/javac/6304921/ |
| H A D | TestLog.java | 80 log.setEndPosTable(fo, tree.endPositions); in test()
82 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/biology/seqan1/seqan-1.3.1/seqan/find/ |
| H A D | find_ahocorasick.h | 184 …String<TPosition> endPositions = getProperty(me.data_terminalStateMap, getProperty(me.data_supplyM…
185 if (!empty(endPositions)) {
188 TStringIterator sit = begin(endPositions);
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/find/ |
| H A D | find_ahocorasick.h | 184 …String<TPosition> endPositions = getProperty(me.data_terminalStateMap, getProperty(me.data_supplyM… in _createAcTrie() local
185 if (!empty(endPositions)) { in _createAcTrie()
188 TStringIterator sit = begin(endPositions); in _createAcTrie()
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/find/ |
| H A D | find_ahocorasick.h | 184 …String<TPosition> endPositions = getProperty(me.data_terminalStateMap, getProperty(me.data_supplyM… in _createAcTrie() local
185 if (!empty(endPositions)) { in _createAcTrie()
188 TStringIterator sit = begin(endPositions); in _createAcTrie()
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/ |
| H A D | find_ahocorasick.h | 198 …String<TPosition> endPositions = getProperty(me.data_terminalStateMap, getProperty(me.data_supplyM…
199 if (!empty(endPositions)) {
202 TStringIterator sit = begin(endPositions);
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/langtools/tools/javac/6304921/ |
| H A D | TestLog.java | 99 log.setEndPosTable(fo, tree.endPositions); in test()
101 TreeScanner ts = new LogTester(log, tree.endPositions); in test()
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|
| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/langtools/tools/javac/tree/ |
| H A D | MissingSemicolonTest.java | 118 int end = ((JCTree) tree).getEndPosition(unit.endPositions); in gatherTreeSpans()
137 int end = ((JCTree) tree).getEndPosition(updated.endPositions); in verifyTreeSpans()
|