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Searched refs:ensSliceGetEnd (Results 1 – 10 of 10) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densbaseadaptor.c1882 (ensSliceGetStart(slice) > ensSliceGetEnd(slice)) in ensBaseadaptorRetrieveFeature()
1904 if ((ensSliceGetStart(slice) > ensSliceGetEnd(slice)) in ensBaseadaptorRetrieveFeature()
1927 if (ensSliceGetStart(slice) > ensSliceGetEnd(slice)) in ensBaseadaptorRetrieveFeature()
1930 slstart = ensSliceGetEnd(slice) - slend + 1; in ensBaseadaptorRetrieveFeature()
1931 slend = ensSliceGetEnd(slice) + sllength - tmpstart + 1; in ensBaseadaptorRetrieveFeature()
1942 slstart = ensSliceGetEnd(slice) - slend + 1; in ensBaseadaptorRetrieveFeature()
1948 slstart = ensSliceGetEnd(slice) - slend - sllength + 1; in ensBaseadaptorRetrieveFeature()
1957 slend = ensSliceGetEnd(slice) - slstart + 1; in ensBaseadaptorRetrieveFeature()
1958 slstart = ensSliceGetEnd(slice) - slend + 1; in ensBaseadaptorRetrieveFeature()
H A Densfeature.c1555 (ensSliceGetEnd(aslice) < alength)) in ensFeatureFetchAllAlternativelocations()
1568 ensSliceGetEnd(aslice) + 1, in ensFeatureFetchAllAlternativelocations()
2155 nf->Start = ensSliceGetEnd(slice) - nfend + 1; in ensFeatureTransfer()
2156 nf->End = ensSliceGetEnd(slice) - nfstart + 1; in ensFeatureTransfer()
2370 nfeature->End = ensSliceGetEnd(pslice); in ensFeatureTransform()
4552 (start > ensSliceGetEnd(slice)) || in featureadaptorRemap()
4563 ensSliceGetEnd(slice), in featureadaptorRemap()
4826 table, ensSliceGetEnd(slice), in featureadaptorSliceFetch()
4837 table, ensSliceGetEnd(slice), in featureadaptorSliceFetch()
4868 table, ensSliceGetEnd(slice), in featureadaptorSliceFetch()
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H A Denssequence.c1041 srstart = ensSliceGetEnd(slice) - end + 1; in ensSequenceadaptorFetchSliceSubSeq()
1043 srend = ensSliceGetEnd(slice) - start + 1; in ensSequenceadaptorFetchSliceSubSeq()
1205 if (ensSliceGetStart(slice) > ensSliceGetEnd(slice)) in ensSequenceadaptorFetchSliceSubStr()
1210 ensSliceGetEnd(slice), in ensSequenceadaptorFetchSliceSubStr()
H A Densslice.h137 ajint ensSliceGetEnd(const EnsPSlice slice);
H A Densassemblymapper.c3544 ensSliceGetEnd(slice), in ensAssemblymapperMapSlice()
3660 ensSliceGetEnd(slice), in ensAssemblymapperMapToSlice()
H A Densgvvariation.c9312 ensSliceGetEnd(slice), in ensGvvariationfeatureadaptorFetchAllbyFrequency()
9427 ensSliceGetEnd(slice)); in ensGvvariationfeatureadaptorFetchAllbyGvpopulation()
9666 ensSliceGetEnd(slice)); in ensGvvariationfeatureadaptorFetchAllbySliceAnnotated()
H A Densexon.c3021 if (ensSliceGetStart(slice) > ensSliceGetEnd(slice)) in ensExonFetchSequenceSliceStr()
H A Densgene.c5257 if ((start >= ensSliceGetStart(slice)) && (end <= ensSliceGetEnd(slice))) in ensGeneadaptorFetchAllbySlice()
H A Densslice.c626 ajint ensSliceGetEnd(const EnsPSlice slice) in ensSliceGetEnd() function
H A Denstranscript.c9137 if ((start >= ensSliceGetStart(slice)) && (end <= ensSliceGetEnd(slice))) in ensTranscriptadaptorFetchAllbySlice()