/dports/math/stanmath/math-4.2.0/test/unit/math/rev/functor/ |
H A D | idas_system_test.cpp | 63 f, eq_id, yy0, yp0, theta, x_r, x_i, msgs}; in idas_system_test() 94 f, eq_id, yy0, yp0, theta, x_r, x_i, msgs}; in idas_forward_sen_test() 128 const std::vector<int> eq_id{1, 1, 0}; in TEST() local 135 idas_system_test(f, eq_id, yy0, yp0, theta, res); in TEST() 147 idas_system_test(f, eq_id, yy0, yp0_var, theta_var, res); in TEST() 157 const std::vector<int> eq_id{1, 1, 0}; in TEST() local 200 const std::vector<int> eq_id{1, 1, 0}; in TEST() local 283 const std::vector<int> eq_id{1, 1, 0}; in TEST() local 299 f, eq_id, yy0, yp0, theta, x_r, x_i, msgs}; in TEST() 302 ASSERT_NO_THROW(build_double(eq_id, yy0, yp0, theta, x_r)); in TEST() [all …]
|
H A D | idas_integrator_test.cpp | 92 std::vector<int> eq_id; member 103 eq_id{1, 1, 0}, 116 f, eq_id, yy0, yp0, theta, x_r, x_i, msgs}; in TEST_F() 136 f, eq_id, yy0, yp0, theta_var, x_r, x_i, msgs); in TEST_F() 149 f, eq_id, yy0, yp0, theta1, x_r, x_i, msgs), in TEST_F() 150 dae2(f, eq_id, yy0, yp0, theta2, x_r, x_i, msgs); in TEST_F() 173 eq_id[0] = 1; in TEST_F() 174 eq_id[1] = 1; in TEST_F() 183 f2, eq_id, yy0, yp0, theta_var, x_r, x_i, msgs); in TEST_F() 192 f2, eq_id, yy0, yp0, theta1, x_r, x_i, msgs), in TEST_F() [all …]
|
H A D | integrate_dae_test.cpp | 57 const std::vector<int> eq_id; member 68 eq_id{1, 1, 0}, 112 f, eq_id, yy0, yp0, theta1, x_r, x_i, msgs), in TEST_F() 113 dae2(f, eq_id, yy0, yp0, theta2, x_r, x_i, msgs); in TEST_F()
|
/dports/biology/p5-Bio-Das/Bio-Das-1.17/eg/ |
H A D | test_map.pl | 14 $m->add_segment(Bio::Location::Simple->new(-seq_id=>'chr1',-start=>4001,-end=>5000), 15 Bio::Location::Simple->new(-seq_id=>'c1.3',-start=>10,-end=>1009)); 22 print_location($m->lookup_segments(Bio::Location::Simple->new(-seq_id=>'c1.2',-start=>500,-end=>502… 23 print_location($m->lookup_segments(Bio::Location::Simple->new(-seq_id=>'c1.2',-start=>499,-end=>500… 24 print_location($m->lookup_segments(Bio::Location::Simple->new(-seq_id=>'c1.2',-start=>499,-end=>501… 25 print_location($m->lookup_segments(Bio::Location::Simple->new(-seq_id=>'c1.2',-start=>10501,-end=>1… 26 print_location($m->lookup_segments(Bio::Location::Simple->new(-seq_id=>'c1.2',-start=>10502,-end=>1…
|
/dports/biology/p5-Bio-Coordinate/Bio-Coordinate-1.007001/lib/Bio/Coordinate/ |
H A D | GeneMapper.pm | 198 (-seq_id => 'propeptide', 350 (-seq_id =>'gene' , 357 (-seq_id => 'cds', 380 (-seq_id => 'gene', 425 (-seq_id => 'exon'. $exon_counter, 483 -seq_id => $loc->seq_id, 784 (-seq_id => $in, 791 (-seq_id => $out, 824 -seq_id => $seqid, 860 -seq_id => 'frame', [all …]
|
H A D | Utils.pm | 46 (-seq_id => $seq1->id, 52 (-seq_id => $seq2->id, 97 (-seq_id => $seq->id, 103 (-seq_id => 'alignment',
|
H A D | ExtrapolatingPair.pm | 57 my $split = Bio::Coordinate::Result->new(-seq_id=>$self->out->seq_id); 100 -seq_id => $self->out->seq_id,
|
/dports/science/elmerfem/elmerfem-release-9.0/fem/src/modules/ |
H A D | Electrokinetics.F90 | 207 INTEGER :: i, N, DIM, istat, body_id, material_id, eq_id, other_body_id,& local 299 eq_id = ListGetInteger( Model % Bodies(body_id) % Values,'Equation', & 365 ElectricFieldMethod = ListGetString( Model % Equations(eq_id) % & 368 WRITE(Message,'(a,i0)' )'No external electric field defined for Equation no. ', eq_id 404 ',for keyword >Electric Field< for Equation no. ', eq_id 453 INTEGER :: i, body_id, material_id, eq_id, DIM local 476 eq_id = ListGetInteger( Model % Bodies(body_id) % Values,'Equation') 512 ElectricFieldMethod = ListGetString( Model % Equations(eq_id) % & 515 WRITE(Message,'(a,i3)' )'No external electric field defined for Equation no.', eq_id 550 ',for keyword >Electric Field< for Equation no.', eq_id
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/ |
H A D | Est2Genome.pm | 194 -seq_id => $qseqname, # FIXME WHEN WE REDO THE GENERIC NAME CHANGE 207 -seq_id => $hseqname, 230 -seq_id => $qseqname, 270 -seq_id => $qseqname, # FIXME WHEN WE REDO THE GENERIC NAME CHANGE 292 -seq_id => $qseqname, # FIXME WHEN WE REDO THE GENERIC NAME CHANGE 305 -seq_id => $hseqname,
|
H A D | tRNAscanSE.pm | 270 ( -seq_id => $seqid, 288 ( -seq_id=> $seqid, 298 ( -seq_id=> $seqid, 309 ( -seq_id=> $seqid,
|
H A D | Genomewise.pm | 183 -seq_id => $self->_target_id, # if this had been specified 194 -seq_id => $self->_target_id, # if this had been specified 213 (-seq_id=>$self->_target_id,
|
H A D | RepeatMasker.pm | 141 (-seq_id => $query_name, 152 (-seq_id => $repeat_name,
|
H A D | Genewise.pm | 295 (-seq_id =>$self->_target_id, 318 -seq_id => $self->_prot_id, 329 -seq_id => $self->_target_id,
|
H A D | Prints.pm | 188 -seq_id =>$sequenceId, 200 -seq_id => $f[0],
|
H A D | PrositeScan.pm | 166 -seq_id => $q_id, 171 -seq_id => $h_id,
|
H A D | FootPrinter.pm | 255 my $feat = Bio::SeqFeature::Generic->new(-seq_id=>$name); 263 ( -seq_id =>"$name-motif".$count++,
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/ |
H A D | tigrxml.pm | 165 (-seq_id => $seqid, 200 -seq_id => $seqid, 222 -seq_id => $seqid, 249 -seq_id => $seqid, 271 -seq_id => $seqid, 291 -seq_id => $seqid, 314 -seq_id => $seqid, 336 -seq_id => $seqid, 415 (-seq_id => $exon->seq_id, 458 (-seq_id => $exon->seq_id,
|
/dports/science/code_saturne/code_saturne-7.1.0/src/cdo/ |
H A D | cs_equation.c | 544 if (eq_id < 0 || eq_id > _n_equations - 1) in cs_equation_by_id() 547 return _equations[eq_id]; in cs_equation_by_id() 1200 _equations[eq_id] = eq; in cs_equation_add() 1225 eq->id = eq_id; in cs_equation_add() 1445 for (int eq_id = 0; eq_id < _n_equations; eq_id++) { in cs_equation_needs_steady_state_solve() local 1513 for (int eq_id = 0; eq_id < _n_equations; eq_id++) { in cs_equation_log_setup() local 1551 for (int eq_id = 0; eq_id < _n_equations; eq_id++) { in cs_equation_set_default_param() local 1580 for (int eq_id = 0; eq_id < _n_equations; eq_id++) { in cs_equation_set_sles() local 1796 for (int eq_id = 0; eq_id < _n_equations; eq_id++) { in cs_equation_set_range_set() local 2008 for (int eq_id = 0; eq_id < _n_equations; eq_id++) { in cs_equation_set_functions() local [all …]
|
H A D | cs_cdo_main.c | 189 for (int eq_id = 0; eq_id < n_equations; eq_id++) { in _compute_steady_user_equations() local 191 cs_equation_t *eq = cs_equation_by_id(eq_id); in _compute_steady_user_equations() 245 for (int eq_id = 0; eq_id < n_equations; eq_id++) { in _compute_unsteady_user_equations() local 247 cs_equation_t *eq = cs_equation_by_id(eq_id); in _compute_unsteady_user_equations()
|
/dports/math/py-pystan/pystan-2.19.0.0/pystan/stan/lib/stan_math/stan/math/rev/mat/functor/ |
H A D | idas_system.hpp | 134 idas_system(const F& f, const std::vector<int>& eq_id, in idas_system() argument 173 "derivative-algebra id", eq_id); in idas_system() 174 check_greater_or_equal(caller, "derivative-algebra id", eq_id, 0); in idas_system() 175 check_less_or_equal(caller, "derivative-algebra id", eq_id, 1); in idas_system() 178 NV_Ith_S(id_, i) = eq_id[i]; in idas_system()
|
/dports/math/stanmath/math-4.2.0/stan/math/rev/functor/ |
H A D | idas_system.hpp | 131 idas_system(const F& f, const std::vector<int>& eq_id, in idas_system() argument 173 "derivative-algebra id", eq_id); in idas_system() 174 check_greater_or_equal(caller, "derivative-algebra id", eq_id, 0); in idas_system() 175 check_less_or_equal(caller, "derivative-algebra id", eq_id, 1); in idas_system() 186 NV_Ith_S(id_, i) = eq_id[i]; in idas_system()
|
/dports/lang/rust/rustc-1.58.1-src/src/tools/clippy/clippy_utils/src/ |
H A D | ast_utils.rs | 30 pub fn eq_id(l: Ident, r: Ident) -> bool { in eq_id() function 74 && eq_id(l.ident, r.ident) in eq_field_pat() 170 (Field(lp, lf), Field(rp, rf)) => eq_id(*lf, *rf) && eq_expr(lp, rp), in eq_expr() 192 && eq_id(l.ident, r.ident) in eq_field() 206 both(l, r, |l, r| eq_id(l.ident, r.ident)) in eq_label() 371 && eq_id(l.ident, r.ident) in eq_variant() 389 && both(&l.ident, &r.ident, |l, r| eq_id(*l, *r)) in eq_struct_field() 440 (Simple(l, _, _), Simple(r, _, _)) => both(l, r, |l, r| eq_id(*l, *r)), in eq_use_tree_kind() 531 && eq_id(l.ident, r.ident) in eq_generic_param() 557 (Outlives(l), Outlives(r)) => eq_id(l.ident, r.ident), in eq_generic_bound() [all …]
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SearchIO/Writer/ |
H A D | GbrowseGFF.pm | 276 -seq_id => $refseq, 303 -seq_id => $refseq, 343 -seq_id => $refseq, 382 -seq_id => $refseq,
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/bin/ |
H A D | bp_search2gff | 179 -seq_id => $qname, 204 -seq_id => $hit->name, 283 -seq_id => $seqid
|
/dports/biology/p5-Bio-Graphics/Bio-Graphics-2.40/lib/Bio/Graphics/Glyph/ |
H A D | arrow.pm | 211 my $map = Bio::Coordinate::Pair->new(-in => Bio::Location::Simple->new( -seq_id => "rel", 216 -out => Bio::Location::Simple->new( -seq_id => "abs", 270 $abs = $map->map( Bio::Location::Simple->new(-seq_id => "rel", 311 $abs = $map->map( Bio::Location::Simple->new(-seq_id => "rel",
|