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Searched refs:extra_returns (Results 1 – 10 of 10) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_api.c201 ASSERT(seq_src && options && extra_returns); in s_RPSExtraStructsSetUp()
324 Blast_SummaryReturn* extra_returns) in s_BlastThreadManager() argument
345 hsp_stream && extra_returns); in s_BlastThreadManager()
587 Blast_SummaryReturn* extra_returns) in Blast_RunSearch() argument
652 extra_returns))) in Blast_RunSearch()
684 extra_returns->error = in Blast_RunSearch()
825 if (extra_returns->error) in Blast_DatabaseSearch()
831 filter_out, extra_returns); in Blast_DatabaseSearch()
942 if (extra_returns->error) in PHIBlastRunSearch()
951 filter_out, extra_returns); in PHIBlastRunSearch()
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H A Dblast_api.h88 Blast_SummaryReturn* extra_returns);
109 Blast_SummaryReturn* extra_returns);
133 Blast_SummaryReturn* extra_returns);
153 SeqLoc** filter_out, Blast_SummaryReturn* extra_returns);
H A Dtwoseq_api.c325 Blast_SummaryReturn* extra_returns, in Blast_SearchOptionsFromSummaryOptions() argument
352 status = SBlastOptionsNew(kProgram, search_options, extra_returns); in Blast_SearchOptionsFromSummaryOptions()
378 Blast_SummaryReturn* extra_returns; in BLAST_TwoSeqLocSets() local
383 extra_returns = Blast_SummaryReturnNew(); in BLAST_TwoSeqLocSets()
387 extra_returns, &options, in BLAST_TwoSeqLocSets()
395 extra_returns); in BLAST_TwoSeqLocSets()
404 *extra_returns_ptr = extra_returns; in BLAST_TwoSeqLocSets()
406 Blast_SummaryReturnFree(extra_returns); in BLAST_TwoSeqLocSets()
H A Dtwoseq_api.h193 Blast_SummaryReturn* extra_returns,
217 Blast_SummaryReturn* *extra_returns);
H A Dblast_options_api.c46 Blast_SummaryReturn* extra_returns) in SBlastOptionsNew() argument
61 if (!options_out || !extra_returns) in SBlastOptionsNew()
72 SBlastMessageWrite(&extra_returns->error, SEV_ERROR, message, NULL, FALSE); in SBlastOptionsNew()
83 …SBlastMessageWrite(&extra_returns->error, SEV_ERROR, "Failed to initialize default options\n", NUL… in SBlastOptionsNew()
H A Dblast_options_api.h80 Blast_SummaryReturn* extra_returns);
H A Dblast_format.c521 Blast_SummaryReturn* extra_returns = Blast_SummaryReturnNew(); in BlastFormattingInfoNewBasic() local
526 extra_returns, advanced_options, in BlastFormattingInfoNewBasic()
529 Blast_SummaryReturnFree(extra_returns); in BlastFormattingInfoNewBasic()
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dbl2seq.c793 Blast_SummaryReturn* extra_returns = Blast_SummaryReturnNew(); in Main_new() local
878 &repeat_mask, &extra_returns->error)) != 0) in Main_new()
880 if (extra_returns && extra_returns->error) in Main_new()
882 ErrSev max_sev = SBlastMessageErrPost(extra_returns->error); in Main_new()
894 &extra_returns); in Main_new()
901 SBlastMessageErrPost(extra_returns->error); in Main_new()
937 extra_returns); in Main_new()
939 status = Blast_PrintOutputFooter(format_info, extra_returns); in Main_new()
945 extra_returns = Blast_SummaryReturnFree(extra_returns); in Main_new()
/dports/math/py-statsmodels/statsmodels-0.13.1/statsmodels/tools/
H A Dnumdiff.py349 extra_returns="""grad : nparray
387 extra_returns="""grad : ndarray
431 extra_returns="",
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dsequin7.c7046 Blast_SummaryReturn *extra_returns; in RNABlastOptionNew() local
7051 extra_returns); in RNABlastOptionNew()
7098 extra_returns = Blast_SummaryReturnFree(extra_returns); in RNABlastOptionNew()
7117 Blast_SummaryReturn *extra_returns; in RNAScreenSequence() local
7133 extra_returns = Blast_SummaryReturnNew(); in RNAScreenSequence()
7136 extra_returns = Blast_SummaryReturnFree(extra_returns); in RNAScreenSequence()
16792 Blast_SummaryReturn *extra_returns; in BarcodeBlastOptionNew() local
16797 extra_returns); in BarcodeBlastOptionNew()
16844 extra_returns = Blast_SummaryReturnFree(extra_returns); in BarcodeBlastOptionNew()
16856 Blast_SummaryReturn *extra_returns; in DoesOneBioseqMatchBarcodeDatabase() local
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