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Searched refs:file_bed (Results 1 – 9 of 9) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma_io.h70 bool ReadFile_bed(const string &file_bed, const set<string> &setSnps,
94 bool PlinkKin(const string &file_bed, vector<int> &indicator_snp,
100 bool ReadFile_bed(const string &file_bed, vector<int> &indicator_idv,
108 bool ReadFile_bed(const string &file_bed, vector<int> &indicator_idv,
140 bool PlinkKin(const string &file_bed, const int display_pace,
H A Dvc.h103 bool PlinkXwz(const string &file_bed, const int display_pace,
116 bool PlinkXtXwz(const string &file_bed, const int display_pace,
H A Dvarcov.cpp350 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local
351 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink()
353 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
H A Dprdt.cpp312 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local
313 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink()
315 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
H A Dlm.cpp499 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local
500 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink()
502 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
H A Dgemma_io.cpp869 ifstream infile(file_bed.c_str(), ios::binary); in ReadFile_bed()
871 cout << "error reading bed file:" << file_bed << endl; in ReadFile_bed()
1586 ifstream infile(file_bed.c_str(), ios::binary); in PlinkKin()
1588 cout << "error reading bed file:" << file_bed << endl; in PlinkKin()
1943 ifstream infile(file_bed.c_str(), ios::binary); in ReadFile_bed()
1945 cout << "error reading bed file:" << file_bed << endl; in ReadFile_bed()
2075 ifstream infile(file_bed.c_str(), ios::binary); in ReadFile_bed()
2077 cout << "error reading bed file:" << file_bed << endl; in ReadFile_bed()
2930 bool PlinkKin(const string &file_bed, const int display_pace, in PlinkKin() argument
2938 ifstream infile(file_bed.c_str(), ios::binary); in PlinkKin()
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H A Dlmm.cpp1702 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local
1703 debug_msg(file_bed); in AnalyzePlink()
1705 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink()
2381 string file_bed = file_bfile + ".bed"; in AnalyzePlinkGXE() local
2382 debug_msg(file_bed); in AnalyzePlinkGXE()
2383 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlinkGXE()
2385 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlinkGXE()
H A Dvc.cpp2314 bool PlinkXwz(const string &file_bed, const int display_pace, in PlinkXwz() argument
2319 ifstream infile(file_bed.c_str(), ios::binary); in PlinkXwz()
2321 cout << "error reading bed file:" << file_bed << endl; in PlinkXwz()
2568 bool PlinkXtXwz(const string &file_bed, const int display_pace, in PlinkXtXwz() argument
2572 ifstream infile(file_bed.c_str(), ios::binary); in PlinkXtXwz()
2574 cout << "error reading bed file:" << file_bed << endl; in PlinkXtXwz()
H A Dmvlmm.cpp3412 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local
3413 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink()
3415 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
4405 string file_bed = file_bfile + ".bed"; in AnalyzePlinkGXE() local
4406 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlinkGXE()
4408 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlinkGXE()