Searched refs:file_bed (Results 1 – 9 of 9) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | gemma_io.h | 70 bool ReadFile_bed(const string &file_bed, const set<string> &setSnps, 94 bool PlinkKin(const string &file_bed, vector<int> &indicator_snp, 100 bool ReadFile_bed(const string &file_bed, vector<int> &indicator_idv, 108 bool ReadFile_bed(const string &file_bed, vector<int> &indicator_idv, 140 bool PlinkKin(const string &file_bed, const int display_pace,
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H A D | vc.h | 103 bool PlinkXwz(const string &file_bed, const int display_pace, 116 bool PlinkXtXwz(const string &file_bed, const int display_pace,
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H A D | varcov.cpp | 350 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local 351 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink() 353 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
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H A D | prdt.cpp | 312 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local 313 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink() 315 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
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H A D | lm.cpp | 499 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local 500 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink() 502 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink()
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H A D | gemma_io.cpp | 869 ifstream infile(file_bed.c_str(), ios::binary); in ReadFile_bed() 871 cout << "error reading bed file:" << file_bed << endl; in ReadFile_bed() 1586 ifstream infile(file_bed.c_str(), ios::binary); in PlinkKin() 1588 cout << "error reading bed file:" << file_bed << endl; in PlinkKin() 1943 ifstream infile(file_bed.c_str(), ios::binary); in ReadFile_bed() 1945 cout << "error reading bed file:" << file_bed << endl; in ReadFile_bed() 2075 ifstream infile(file_bed.c_str(), ios::binary); in ReadFile_bed() 2077 cout << "error reading bed file:" << file_bed << endl; in ReadFile_bed() 2930 bool PlinkKin(const string &file_bed, const int display_pace, in PlinkKin() argument 2938 ifstream infile(file_bed.c_str(), ios::binary); in PlinkKin() [all …]
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H A D | lmm.cpp | 1702 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local 1703 debug_msg(file_bed); in AnalyzePlink() 1705 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink() 2381 string file_bed = file_bfile + ".bed"; in AnalyzePlinkGXE() local 2382 debug_msg(file_bed); in AnalyzePlinkGXE() 2383 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlinkGXE() 2385 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlinkGXE()
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H A D | vc.cpp | 2314 bool PlinkXwz(const string &file_bed, const int display_pace, in PlinkXwz() argument 2319 ifstream infile(file_bed.c_str(), ios::binary); in PlinkXwz() 2321 cout << "error reading bed file:" << file_bed << endl; in PlinkXwz() 2568 bool PlinkXtXwz(const string &file_bed, const int display_pace, in PlinkXtXwz() argument 2572 ifstream infile(file_bed.c_str(), ios::binary); in PlinkXtXwz() 2574 cout << "error reading bed file:" << file_bed << endl; in PlinkXtXwz()
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H A D | mvlmm.cpp | 3412 string file_bed = file_bfile + ".bed"; in AnalyzePlink() local 3413 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlink() 3415 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlink() 4405 string file_bed = file_bfile + ".bed"; in AnalyzePlinkGXE() local 4406 ifstream infile(file_bed.c_str(), ios::binary); in AnalyzePlinkGXE() 4408 cout << "error reading bed file:" << file_bed << endl; in AnalyzePlinkGXE()
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