Searched refs:file_gene (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/gemma/GEMMA-0.98.3/src/ |
| H A D | lm.cpp | 57 file_gene = cPar.file_gene; in CopyFromParam()
94 if (!file_gene.empty()) { in WriteFiles()
292 ifstream infile(file_gene.c_str(), ifstream::in); in AnalyzeGene()
294 cout << "error reading gene expression file:" << file_gene << endl; in AnalyzeGene()
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| H A D | lm.h | 42 string file_gene; variable
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| H A D | param.cpp | 440 if (!file_gene.empty()) { in ReadFiles()
465 if (ReadFile_gene(file_gene, vec_read, snpInfo, ng_total) == false) { in ReadFiles()
486 if (file_geno.empty() && file_gene.empty() && !file_pheno.empty()) { in ReadFiles()
657 if (n_ph > 1 && !file_gene.empty()) { in CheckParam()
714 if ((!file_geno.empty() || !file_gene.empty())) { in CheckParam()
728 str = file_gene; in CheckParam()
820 if (!file_gene.empty()) { in CheckParam()
1120 if (!file_gene.empty()) { in CheckData()
1138 if (!file_gene.empty() && d_pace == DEFAULT_PACE) { in CheckData()
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| H A D | lmm.h | 61 string file_gene; variable
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| H A D | lmm.cpp | 61 file_gene = cPar.file_gene; in CopyFromParam()
176 if (!file_gene.empty()) { in WriteFiles()
1358 debug_msg(file_gene); in AnalyzeGene()
1359 igzstream infile(file_gene.c_str(), igzstream::in); in AnalyzeGene()
1361 cout << "error reading gene expression file:" << file_gene << endl; in AnalyzeGene()
1393 ch_ptr = strtok_safe2((char *)line.c_str(), " , \t",file_gene.c_str()); in AnalyzeGene()
1398 ch_ptr = strtok_safe2(NULL, " , \t",file_gene.c_str()); in AnalyzeGene()
2232 auto infilen = file_gene.c_str(); in AnalyzeBimbamGXE()
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| H A D | param.h | 157 string file_gene; // Gene expression file. variable
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| H A D | gemma_io.h | 118 bool ReadFile_gene(const string &file_gene, vector<double> &vec_read,
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| H A D | gemma.cpp | 1024 cPar.file_gene = str; in Assign()
2075 if (!cPar.file_gene.empty()) { in BatchRun()
2666 } else if (!cPar.file_gene.empty()) { in BatchRun()
3312 if (!(cPar.file_gene).empty()) { in WriteLog()
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| H A D | gemma_io.cpp | 2290 bool ReadFile_gene(const string &file_gene, vector<double> &vec_read, in ReadFile_gene() argument
2296 igzstream infile(file_gene.c_str(), igzstream::in); in ReadFile_gene()
2298 cout << "error! fail to open gene expression file: " << file_gene << endl; in ReadFile_gene()
2312 ch_ptr = strtok_safe2((char *)line.c_str(), " ,\t",file_gene.c_str()); in ReadFile_gene()
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