Searched refs:file_kin (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/gemma/GEMMA-0.98.3/src/ |
| H A D | gemma.cpp | 849 cPar.file_kin = str; in Assign()
1669 if (!cPar.file_kin.empty() && !cPar.file_ebv.empty()) { in BatchRun()
1686 ReadFile_kin(cPar.file_kin, indicator_all, cPar.mapID2num, cPar.k_mode, in BatchRun()
2349 } else if (!(cPar.file_kin).empty()) { in BatchRun()
2350 ReadFile_kin(cPar.file_kin, cPar.indicator_idv, cPar.mapID2num, in BatchRun()
2578 if (!(cPar.file_kin).empty()) { in BatchRun()
2579 ReadFile_kin(cPar.file_kin, cPar.indicator_idv, cPar.mapID2num, in BatchRun()
2888 if (!(cPar.file_kin).empty()) { in BatchRun()
2892 ReadFile_kin(cPar.file_kin, cPar.indicator_idv, cPar.mapID2num, in BatchRun()
2999 if (!(cPar.file_kin).empty()) { in BatchRun()
[all …]
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| H A D | param.cpp | 867 if (file_kin.empty() && (file_ku.empty() || file_kd.empty()) && in CheckParam()
881 if (file_kin.empty() && (file_ku.empty() || file_kd.empty()) && in CheckParam()
905 if (!file_ebv.empty() && file_kin.empty()) { in CheckParam()
932 enforce_fexists(file_kin, "open file"); in CheckParam()
951 (file_kin.empty() && (file_ku.empty() || file_kd.empty()))) { in CheckParam()
956 if ((a_mode == 43) && file_kin.empty()) { in CheckParam()
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| H A D | param.h | 144 string file_kin, file_mk; variable
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| H A D | gemma_io.h | 81 void ReadFile_kin(const string &file_kin, vector<int> &indicator_idv,
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| H A D | gemma_io.cpp | 1169 void ReadFile_kin(const string &file_kin, vector<int> &indicator_idv, in ReadFile_kin() argument
1173 igzstream infile(file_kin.c_str(), igzstream::in); in ReadFile_kin()
1175 cout << "error! fail to open kinship file: " << file_kin << endl; in ReadFile_kin()
1241 auto infilen=file_kin.c_str(); in ReadFile_kin()
1290 string file_kin, line; in ReadFile_mk() local
1294 file_kin = line.c_str(); in ReadFile_mk()
1297 ReadFile_kin(file_kin, indicator_idv, mapID2num, k_mode, error, in ReadFile_mk()
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