Searched refs:file_pheno (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/gemma/GEMMA-0.98.3/src/ |
| H A D | param.cpp | 183 if (ReadFile_pheno(file_pheno, indicator_pheno, pheno, p_column) == in ReadFiles()
258 if (!file_pheno.empty()) { in ReadFiles()
261 if (ReadFile_pheno(file_pheno, indicator_pheno, pheno, p_column) == in ReadFiles()
302 if (ReadFile_pheno(file_pheno, indicator_pheno, pheno, p_column) == false) { in ReadFiles()
345 if (!file_pheno.empty()) { in ReadFiles()
348 if (ReadFile_pheno(file_pheno, indicator_pheno, pheno, p_column) == in ReadFiles()
486 if (file_geno.empty() && file_gene.empty() && !file_pheno.empty()) { in ReadFiles()
715 str = file_pheno; in CheckParam()
854 if (file_pheno.empty() && (a_mode == 43 || a_mode == 5)) { in CheckParam()
866 } else if (!file_pheno.empty()) { in CheckParam()
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| H A D | gemma_io.h | 55 bool ReadFile_pheno(const string &file_pheno,
59 bool ReadFile_column(const string &file_pheno, vector<int> &indicator_idv,
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| H A D | param.h | 135 string file_pheno; variable
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| H A D | gemma_io.cpp | 340 bool ReadFile_column(const string &file_pheno, vector<int> &indicator_idv, in ReadFile_column() argument
346 igzstream infile(file_pheno.c_str(), igzstream::in); in ReadFile_column()
348 cout << "error! fail to open phenotype file: " << file_pheno << endl; in ReadFile_column()
357 auto infilen = file_pheno.c_str(); in ReadFile_column()
382 bool ReadFile_pheno(const string &file_pheno, in ReadFile_pheno() argument
390 igzstream infile(file_pheno.c_str(), igzstream::in); in ReadFile_pheno()
392 cout << "error! fail to open phenotype file: " << file_pheno << endl; in ReadFile_pheno()
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| H A D | gemma.cpp | 801 cPar.file_pheno = str; in Assign()
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