Searched refs:findClosestSequences (Results 1 – 13 of 13) sorted by relevance
| /dports/biology/mothur/mothur-1.46.1/source/datastructures/ |
| H A D | suffixdb.hpp | 34 vector<int> findClosestSequences(Sequence*, int, vector<float>&) const;
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| H A D | distancedb.hpp | 27 …vector<int> findClosestSequences(Sequence*, int, vector<float>&) const; // returns indexes of n c…
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| H A D | kmerdb.hpp | 34 vector<int> findClosestSequences(Sequence*, int, vector<float>&) const;
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| H A D | blastdb.hpp | 25 vector<int> findClosestSequences(Sequence*, int, vector<float>&) const;
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| H A D | optidb.hpp | 34 vector<int> findClosestSequences(Sequence*, int, vector<float>&) const { return nullIntVector; } in findClosestSequences() function in OptiDB
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| H A D | suffixdb.cpp | 37 vector<int> SuffixDB::findClosestSequences(Sequence* candidateSeq, int num, vector<float>& Scores) … in findClosestSequences() function in SuffixDB
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| H A D | searchdatabase.hpp | 60 …virtual vector<int> findClosestSequences(Sequence*, int, vector<float>&) const = 0; // returns in…
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| H A D | distancedb.cpp | 50 vector<int> DistanceDB::findClosestSequences(Sequence* query, int numWanted, vector<float>& Scores)… in findClosestSequences() function in DistanceDB
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| H A D | alignmentdb.cpp | 153 vector<int> spot = search->findClosestSequences(seq, 1, scores); in findClosestSequence()
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| H A D | kmerdb.cpp | 64 vector<int> KmerDB::findClosestSequences(Sequence* candidateSeq, int num, vector<float>& Scores) co… in findClosestSequences() function in KmerDB
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| H A D | blastdb.cpp | 134 vector<int> BlastDB::findClosestSequences(Sequence* seq, int n, vector<float>& scores) const { in findClosestSequences() function in BlastDB
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| /dports/biology/mothur/mothur-1.46.1/source/classifier/ |
| H A D | knn.cpp | 59 vector<int> closest = database->findClosestSequences(seq, num, Scores); in getTaxonomy()
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| /dports/biology/mothur/mothur-1.46.1/source/chimera/ |
| H A D | chimeraslayer.cpp | 904 vector<int> tempIndexesLeft = databaseLeft->findClosestSequences(queryLeft, num, Scores); in getKmerSeqs()
905 vector<int> tempIndexesRight = databaseRight->findClosestSequences(queryRight, num, Scores); in getKmerSeqs()
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