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Searched refs:firstAtomToJoinTo (Results 1 – 1 of 1) sorted by relevance

/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/
H A DStructureBuildingMethods.java2080 Atom firstAtomToJoinTo; in formEpoxide() local
2082firstAtomToJoinTo = fragToJoinTo.getAtomByLocantOrThrow(bridgingFragment.getOutAtom(0).getLocant()… in formEpoxide()
2085 firstAtomToJoinTo = atomToJoinTo; in formEpoxide()
2091 state.fragManager.createBond(outAtom1.getAtom(), firstAtomToJoinTo, outAtom1.getValency()); in formEpoxide() local
2098 int index = atomList.indexOf(firstAtomToJoinTo); in formEpoxide()
2102 possibleSecondAtom.removeAll(Collections.singleton(firstAtomToJoinTo)); in formEpoxide()
2114 if (outAtom1.getAtom().equals(outAtom2.getAtom()) && firstAtomToJoinTo == secondAtomToJoinTo){ in formEpoxide()
2125 return new Atom[]{firstAtomToJoinTo, secondAtomToJoinTo}; in formEpoxide()