Searched refs:formatdbCommand (Results 1 – 2 of 2) sorted by relevance
40 string formatdbCommand = path + "formatdb" + EXECUTABLE_EXT; in BlastDB() local41 formatdbCommand = util.getFullPathName(formatdbCommand); in BlastDB()42 bool ableToOpen = util.openInputFile(formatdbCommand, in, "no error"); in.close(); in BlastDB()86 string formatdbCommand = path + "formatdb" + EXECUTABLE_EXT; in BlastDB() local87 formatdbCommand = util.getFullPathName(formatdbCommand); in BlastDB()88 bool ableToOpen = util.openInputFile(formatdbCommand, in, "no error"); in.close(); in BlastDB()282 string formatdbCommand; in generateDB() local285 …formatdbCommand = path + "formatdb -p F -o T -i " + dbFileName; // format the database, -o option … in generateDB()289 formatdbCommand = "\"" + path + "formatdb\" -p F -o T -i " + "\"" + dbFileName + "\""; in generateDB()291 formatdbCommand = "\"" + formatdbCommand + "\""; in generateDB()[all …]
266 string formatdbCommand = blastlocation + "formatdb" + EXECUTABLE_EXT; in ChimeraSlayerCommand() local267 formatdbCommand = util.getFullPathName(formatdbCommand); in ChimeraSlayerCommand()268 bool ableToOpen = util.openInputFile(formatdbCommand, in, "no error"); in.close(); in ChimeraSlayerCommand()269 …if(!ableToOpen) { m->mothurOut("[ERROR]: " + formatdbCommand + " file does not exist. mothur requi… in ChimeraSlayerCommand()