Searched refs:frac_invariant_sites (Results 1 – 6 of 6) sorted by relevance
/dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
H A D | modelfactory.cpp | 606 if (tree->aln->frac_invariant_sites > 0) { in ModelFactory() 612 …alid use of +ASC_MIS because of " + convertIntToString(tree->aln->frac_invariant_sites*tree->aln->… in ModelFactory() 632 if (tree->aln->frac_invariant_sites > 0) { in ModelFactory() 646 …"Invalid use of +ASC because of " + convertIntToString(tree->aln->frac_invariant_sites*tree->aln->… in ModelFactory()
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/dports/biology/iqtree/IQ-TREE-2.0.6/alignment/ |
H A D | alignment.h | 762 double frac_invariant_sites; variable
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H A D | superalignment.cpp | 1610 frac_invariant_sites = 0; in countConstSite() 1621 frac_invariant_sites += (*it)->frac_invariant_sites * (*it)->getNSite(); in countConstSite() 1624 frac_invariant_sites /= nsites; in countConstSite()
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H A D | alignment.cpp | 65 frac_invariant_sites = 0.0; in Alignment() 408 frac_invariant_sites = 0.0; in Alignment() 480 frac_invariant_sites = 0.0; in Alignment() 3691 frac_invariant_sites = ((double)num_invariant_sites) / getNSite(); in countConstSite()
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/dports/biology/iqtree/IQ-TREE-2.0.6/main/ |
H A D | phylotesting.cpp | 194 void getRateHet(SeqType seq_type, string model_name, double frac_invariant_sites, 214 …getRateHet(aln->seq_type, Params::getInstance().model_name, aln->frac_invariant_sites, "1", ratehe… in getUsualModel() 1083 void getRateHet(SeqType seq_type, string model_name, double frac_invariant_sites, in getRateHet() argument 1112 else if (frac_invariant_sites == 0.0) { in getRateHet() 1134 } else if (frac_invariant_sites >= 1.0) { in getRateHet() 1151 if (frac_invariant_sites == 0.0) { in getRateHet() 1242 getRateHet(seq_type, params.model_name, aln->frac_invariant_sites, ratehet_set, ratehet); in generate()
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H A D | phyloanalysis.cpp | 156 << round(alignment.frac_invariant_sites * alignment.getNSite()) in reportAlignment() 157 << " (= " << alignment.frac_invariant_sites * 100 << "% of all sites)" << endl in reportAlignment()
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