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Searched refs:frag_idx (Results 1 – 25 of 83) sorted by relevance

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/dports/databases/tiledb/TileDB-2.5.2/tiledb/sm/query/
H A Dsparse_global_order_reader.cc403 auto f = rt.frag_idx(); in fix_memory_usage_after_serialization()
621 unsigned int frag_idx, in add_next_tile_to_queue() argument
643 while (!found && result_tiles_it[frag_idx] != result_tiles_[frag_idx].end()) { in add_next_tile_to_queue()
691 result_tiles_it[frag_idx]++; in add_next_tile_to_queue()
694 result_tiles_it[frag_idx]++; in add_next_tile_to_queue()
763 auto frag_idx = tile->frag_idx(); in calculate_hilbert_values() local
868 if (to_process.tile_->frag_idx() < next_tile.tile_->frag_idx()) { in merge_result_cell_slabs()
979 tile->frag_idx(), in merge_result_cell_slabs()
1054 for (unsigned frag_idx = 0; frag_idx < fragment_num; frag_idx++) { in end_iteration() local
1091 for (unsigned frag_idx = 0; frag_idx < fragment_num; frag_idx++) { in end_iteration() local
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H A Dresult_space_tile.h98 unsigned frag_idx, const std::reference_wrapper<const NDRange>& dom) { in append_frag_domain() argument
99 frag_domains_.emplace_back(frag_idx, dom); in append_frag_domain()
103 void set_result_tile(unsigned frag_idx, const ResultTile& result_tile) { in set_result_tile() argument
104 assert(result_tiles_.count(frag_idx) == 0); in set_result_tile()
105 result_tiles_[frag_idx] = result_tile; in set_result_tile()
109 ResultTile* result_tile(unsigned frag_idx) { in result_tile() argument
110 auto it = result_tiles_.find(frag_idx); in result_tile()
H A Dsparse_unordered_with_dups_reader.cc333 auto f = result_tiles_.front().frag_idx(); in clear_result_tiles()
406 auto f = rt.frag_idx(); in fix_memory_usage_after_serialization()
767 remove_result_tile_range(rt->frag_idx()); in create_result_cell_slabs()
773 read_state_.frag_tile_idx_[rt->frag_idx()] = in create_result_cell_slabs()
780 auto f = rt->frag_idx(); in create_result_cell_slabs()
799 unsigned frag_idx, std::list<ResultTile>::iterator rt) { in remove_result_tile() argument
804 array_schema_->dim_num(), frag_idx, tile_idx, &tiles_size)); in remove_result_tile()
837 while (result_tiles_.front().frag_idx() != new_front.tile_->frag_idx() || in end_iteration()
839 auto f = result_tiles_.front().frag_idx(); in end_iteration()
851 auto last_f = result_tiles_.front().frag_idx(); in end_iteration()
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H A Dresult_tile.h83 ResultTile(unsigned frag_idx, uint64_t tile_idx, const Domain* domain);
164 unsigned frag_idx() const;
210 unsigned frag_idx,
260 unsigned frag_idx,
H A Dreader.cc296 unsigned frag_idx, in compute_range_result_coords() argument
316 frag_idx, in compute_range_result_coords()
674 auto frag_idx = result_cell_slab.tile_->frag_idx(); in compute_result_cell_slabs_row_col() local
676 auto frag_tile_tuple = std::pair<unsigned, uint64_t>(frag_idx, tile_idx); in compute_result_cell_slabs_row_col()
799 if (it->tile_->frag_idx() < next_it->tile_->frag_idx()) { in dedup_result_coords()
1141 unsigned frag_idx, uint64_t tile_idx) const { in sparse_tile_overwritten() argument
1142 const auto& mbr = fragment_metadata_[frag_idx]->mbr(tile_idx); in sparse_tile_overwritten()
1147 for (unsigned f = frag_idx + 1; f < fragment_num; ++f) { in sparse_tile_overwritten()
1179 if (!fragment_metadata_[rt->frag_idx()]->dense()) in get_result_tile_stats()
1254 uint32_t last_frag_idx = iter_begin->tile_->frag_idx(); in belong_to_single_fragment()
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H A Dsparse_global_order_reader.h166 unsigned int frag_idx,
191 unsigned frag_idx, std::list<ResultTile>::iterator rt);
H A Dresult_tile.cc53 unsigned frag_idx, uint64_t tile_idx, const Domain* domain) in ResultTile() argument
55 , frag_idx_(frag_idx) in ResultTile()
218 unsigned ResultTile::frag_idx() const { in frag_idx() function in tiledb::sm::ResultTile
343 unsigned frag_idx, in compute_results_dense() argument
371 for (auto f = frag_idx + 1; f < frag_num && !overwritten; ++f) { in compute_results_dense()
418 for (auto f = frag_idx + 1; f < frag_num && !overwritten; ++f) { in compute_results_dense()
925 unsigned frag_idx, in compute_results_dense() argument
934 frag_idx, in compute_results_dense()
/dports/science/libefp/libefp-1.5.0/src/
H A Defp.h523 enum efp_result efp_set_frag_coordinates(struct efp *efp, size_t frag_idx,
554 enum efp_result efp_get_frag_xyzabc(struct efp *efp, size_t frag_idx,
607 enum efp_result efp_get_ai_screen(struct efp *efp, size_t frag_idx,
686 enum efp_result efp_get_frag_charge(struct efp *efp, size_t frag_idx,
829 enum efp_result efp_get_lmo_count(struct efp *efp, size_t frag_idx,
846 enum efp_result efp_get_lmo_coordinates(struct efp *efp, size_t frag_idx,
945 enum efp_result efp_get_frag_mass(struct efp *efp, size_t frag_idx,
961 enum efp_result efp_get_frag_inertia(struct efp *efp, size_t frag_idx,
976 enum efp_result efp_get_frag_atom_count(struct efp *efp, size_t frag_idx,
994 enum efp_result efp_get_frag_atoms(struct efp *efp, size_t frag_idx,
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H A Defp.c748 assert(frag_idx < efp->n_frag); in efp_set_frag_coordinates()
750 frag = efp->frags + frag_idx; in efp_set_frag_coordinates()
792 assert(frag_idx < efp->n_frag); in efp_get_frag_xyzabc()
795 frag = efp->frags + frag_idx; in efp_get_frag_xyzabc()
865 assert(frag_idx < efp->n_frag); in efp_get_ai_screen()
867 frag = &efp->frags[frag_idx]; in efp_get_ai_screen()
1020 assert(frag_idx < efp->n_frag); in efp_get_frag_charge()
1022 frag = efp->frags + frag_idx; in efp_get_frag_charge()
1190 frag = efp->frags + frag_idx; in efp_get_lmo_coordinates()
1209 frag = efp->frags + frag_idx; in efp_get_xrfit()
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H A Dpol.c119 const struct frag *fr_j = efp->frags + frag_idx; in get_elec_field()
124 if (i == frag_idx || efp_skip_frag_pair(efp, i, frag_idx)) in get_elec_field()
292 struct frag *fr_i = efp->frags + frag_idx; in get_induced_dipole_field()
298 if (j == frag_idx || efp_skip_frag_pair(efp, frag_idx, j)) in get_induced_dipole_field()
487 const struct frag *fr_i = efp->frags + frag_idx; in compute_grad_point()
500 if (j == frag_idx || efp_skip_frag_pair(efp, frag_idx, j)) in compute_grad_point()
548 efp_add_force(efp->grad + frag_idx, CVEC(fr_i->x), in compute_grad_point()
689 six_atomic_add_xyz(efp->grad + frag_idx, &force); in compute_grad_point()
760 assert(frag_idx < efp->n_frag); in efp_get_electric_field()
764 const struct frag *frag = efp->frags + frag_idx; in efp_get_electric_field()
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/dports/science/libefp/libefp-1.5.0/interface/
H A Defp.f90237 integer(c_size_t), value :: frag_idx
255 integer(c_size_t), value :: frag_idx
282 integer(c_size_t), value :: frag_idx
329 integer(c_size_t), value :: frag_idx
338 integer(c_size_t), value :: frag_idx
347 integer(c_size_t), value :: frag_idx
412 integer(c_size_t), value :: frag_idx
421 integer(c_size_t), value :: frag_idx
430 integer(c_size_t), value :: frag_idx
463 integer(c_size_t), value :: frag_idx
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/ucg/builtin/ops/
H A Dbuiltin_comp_step.inl33 unsigned frag_idx; local
35 for (frag_idx = 0; frag_idx < req->step->fragments; frag_idx++) {
36 ucs_assert(req->step->fragment_pending[frag_idx] == 0);
H A Dbuiltin_data.c369 unsigned frag_idx = 0; \
370 while ((frag_idx < step->fragments) && \
371 (step->fragment_pending[frag_idx] == \
373 frag_idx++; \
375 ucs_assert(frag_idx < step->fragments); \
376 step->iter_offset = frag_idx * step->fragment_length; \
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DCSRA1_Read.c65 …ic bool CSRA1_ReadFragIsAligned ( CSRA1_Read * self, ctx_t ctx, uint32_t frag_idx );
378 if ( self -> frag_idx >= self -> frag_max ) in CSRA1_FragmentIsAligned()
398 return orig[self -> frag_idx] != 0; in CSRA1_FragmentIsAligned()
404 bool CSRA1_ReadFragIsAligned ( CSRA1_Read * cself, ctx_t ctx, uint32_t frag_idx ) in CSRA1_ReadFragIsAligned() argument
425 if ( frag_idx >= self -> bio_frags ) in CSRA1_ReadFragIsAligned()
448 return orig [ frag_idx ] != 0; in CSRA1_ReadFragIsAligned()
454 if ( bidx == frag_idx ) in CSRA1_ReadFragIsAligned()
489 self -> frag_idx = 0; in CSRA1_ReadIteratorNext()
H A DSRA_Read.c520 bool SRA_ReadFragIsAligned ( SRA_Read * self, ctx_t ctx, uint32_t frag_idx ) in SRA_ReadFragIsAligned() argument
538 if ( frag_idx >= self -> bio_frags ) in SRA_ReadFragIsAligned()
690 self -> frag_idx = 0; in SRA_ReadIteratorNext()
921 ++ self -> frag_idx; in SRA_FragmentNext()
925 for ( self -> seen_first_frag = true; self -> frag_idx < self -> frag_max; ++ self -> frag_idx ) in SRA_FragmentNext()
927 if ( self -> READ_LEN [ self -> frag_idx ] != 0 ) in SRA_FragmentNext()
931 self -> frag_len = self -> READ_LEN [ self -> frag_idx ]; in SRA_FragmentNext()
936 if ( ( self -> READ_TYPE [ self -> frag_idx ] & READ_TYPE_BIOLOGICAL ) != 0 ) in SRA_FragmentNext()
H A DNGS_Read.c84 … ITF_Read_v1_frag_is_aligned ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint32_t frag_idx ) in ITF_Read_v1_frag_is_aligned() argument
87 ON_FAIL ( bool ret = NGS_ReadFragIsAligned ( Self ( self ), ctx, frag_idx ) ) in ITF_Read_v1_frag_is_aligned()
304 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NGS_ReadFragIsAligned() argument
313 return VT ( self, frag_is_aligned ) ( self, ctx, frag_idx ); in NGS_ReadFragIsAligned()
443 static bool NullRead_FragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NullRead_FragIsAligned() argument
H A DNGS_Read.h129 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx );
166 … bool ( * frag_is_aligned ) ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
H A DSRA_Read.h92 uint32_t frag_idx; member
123 bool SRA_ReadFragIsAligned ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DCSRA1_Read.c65 …ic bool CSRA1_ReadFragIsAligned ( CSRA1_Read * self, ctx_t ctx, uint32_t frag_idx );
378 if ( self -> frag_idx >= self -> frag_max ) in CSRA1_FragmentIsAligned()
398 return orig[self -> frag_idx] != 0; in CSRA1_FragmentIsAligned()
404 bool CSRA1_ReadFragIsAligned ( CSRA1_Read * cself, ctx_t ctx, uint32_t frag_idx ) in CSRA1_ReadFragIsAligned() argument
425 if ( frag_idx >= self -> bio_frags ) in CSRA1_ReadFragIsAligned()
448 return orig [ frag_idx ] != 0; in CSRA1_ReadFragIsAligned()
454 if ( bidx == frag_idx ) in CSRA1_ReadFragIsAligned()
489 self -> frag_idx = 0; in CSRA1_ReadIteratorNext()
H A DSRA_Read.c520 bool SRA_ReadFragIsAligned ( SRA_Read * self, ctx_t ctx, uint32_t frag_idx ) in SRA_ReadFragIsAligned() argument
538 if ( frag_idx >= self -> bio_frags ) in SRA_ReadFragIsAligned()
690 self -> frag_idx = 0; in SRA_ReadIteratorNext()
921 ++ self -> frag_idx; in SRA_FragmentNext()
925 for ( self -> seen_first_frag = true; self -> frag_idx < self -> frag_max; ++ self -> frag_idx ) in SRA_FragmentNext()
927 if ( self -> READ_LEN [ self -> frag_idx ] != 0 ) in SRA_FragmentNext()
931 self -> frag_len = self -> READ_LEN [ self -> frag_idx ]; in SRA_FragmentNext()
936 if ( ( self -> READ_TYPE [ self -> frag_idx ] & READ_TYPE_BIOLOGICAL ) != 0 ) in SRA_FragmentNext()
H A DNGS_Read.c84 … ITF_Read_v1_frag_is_aligned ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint32_t frag_idx ) in ITF_Read_v1_frag_is_aligned() argument
87 ON_FAIL ( bool ret = NGS_ReadFragIsAligned ( Self ( self ), ctx, frag_idx ) ) in ITF_Read_v1_frag_is_aligned()
304 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NGS_ReadFragIsAligned() argument
313 return VT ( self, frag_is_aligned ) ( self, ctx, frag_idx ); in NGS_ReadFragIsAligned()
443 static bool NullRead_FragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NullRead_FragIsAligned() argument
H A DNGS_Read.h129 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx );
166 … bool ( * frag_is_aligned ) ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
H A DSRA_Read.h92 uint32_t frag_idx; member
123 bool SRA_ReadFragIsAligned ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
/dports/science/libefp/libefp-1.5.0/efpmd/src/
H A Defield.c32 print_field(size_t frag_idx, const struct efp_atom *atom, const double *field) in print_field() argument
36 frag_idx); in print_field()
/dports/sysutils/fusefs-squashfuse/squashfuse-0.1.103/
H A Dfile.c55 err = sqfs_frag_entry(fs, &frag, inode->xtra.reg.frag_idx); in sqfs_frag_block()
72 if (inode->xtra.reg.frag_idx == SQUASHFS_INVALID_FRAG) { in sqfs_blocklist_count()
150 if (inode->xtra.reg.frag_idx == SQUASHFS_INVALID_FRAG) in sqfs_read_range()

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