/dports/databases/tiledb/TileDB-2.5.2/tiledb/sm/query/ |
H A D | sparse_global_order_reader.cc | 403 auto f = rt.frag_idx(); in fix_memory_usage_after_serialization() 621 unsigned int frag_idx, in add_next_tile_to_queue() argument 643 while (!found && result_tiles_it[frag_idx] != result_tiles_[frag_idx].end()) { in add_next_tile_to_queue() 691 result_tiles_it[frag_idx]++; in add_next_tile_to_queue() 694 result_tiles_it[frag_idx]++; in add_next_tile_to_queue() 763 auto frag_idx = tile->frag_idx(); in calculate_hilbert_values() local 868 if (to_process.tile_->frag_idx() < next_tile.tile_->frag_idx()) { in merge_result_cell_slabs() 979 tile->frag_idx(), in merge_result_cell_slabs() 1054 for (unsigned frag_idx = 0; frag_idx < fragment_num; frag_idx++) { in end_iteration() local 1091 for (unsigned frag_idx = 0; frag_idx < fragment_num; frag_idx++) { in end_iteration() local [all …]
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H A D | result_space_tile.h | 98 unsigned frag_idx, const std::reference_wrapper<const NDRange>& dom) { in append_frag_domain() argument 99 frag_domains_.emplace_back(frag_idx, dom); in append_frag_domain() 103 void set_result_tile(unsigned frag_idx, const ResultTile& result_tile) { in set_result_tile() argument 104 assert(result_tiles_.count(frag_idx) == 0); in set_result_tile() 105 result_tiles_[frag_idx] = result_tile; in set_result_tile() 109 ResultTile* result_tile(unsigned frag_idx) { in result_tile() argument 110 auto it = result_tiles_.find(frag_idx); in result_tile()
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H A D | sparse_unordered_with_dups_reader.cc | 333 auto f = result_tiles_.front().frag_idx(); in clear_result_tiles() 406 auto f = rt.frag_idx(); in fix_memory_usage_after_serialization() 767 remove_result_tile_range(rt->frag_idx()); in create_result_cell_slabs() 773 read_state_.frag_tile_idx_[rt->frag_idx()] = in create_result_cell_slabs() 780 auto f = rt->frag_idx(); in create_result_cell_slabs() 799 unsigned frag_idx, std::list<ResultTile>::iterator rt) { in remove_result_tile() argument 804 array_schema_->dim_num(), frag_idx, tile_idx, &tiles_size)); in remove_result_tile() 837 while (result_tiles_.front().frag_idx() != new_front.tile_->frag_idx() || in end_iteration() 839 auto f = result_tiles_.front().frag_idx(); in end_iteration() 851 auto last_f = result_tiles_.front().frag_idx(); in end_iteration() [all …]
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H A D | result_tile.h | 83 ResultTile(unsigned frag_idx, uint64_t tile_idx, const Domain* domain); 164 unsigned frag_idx() const; 210 unsigned frag_idx, 260 unsigned frag_idx,
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H A D | reader.cc | 296 unsigned frag_idx, in compute_range_result_coords() argument 316 frag_idx, in compute_range_result_coords() 674 auto frag_idx = result_cell_slab.tile_->frag_idx(); in compute_result_cell_slabs_row_col() local 676 auto frag_tile_tuple = std::pair<unsigned, uint64_t>(frag_idx, tile_idx); in compute_result_cell_slabs_row_col() 799 if (it->tile_->frag_idx() < next_it->tile_->frag_idx()) { in dedup_result_coords() 1141 unsigned frag_idx, uint64_t tile_idx) const { in sparse_tile_overwritten() argument 1142 const auto& mbr = fragment_metadata_[frag_idx]->mbr(tile_idx); in sparse_tile_overwritten() 1147 for (unsigned f = frag_idx + 1; f < fragment_num; ++f) { in sparse_tile_overwritten() 1179 if (!fragment_metadata_[rt->frag_idx()]->dense()) in get_result_tile_stats() 1254 uint32_t last_frag_idx = iter_begin->tile_->frag_idx(); in belong_to_single_fragment() [all …]
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H A D | sparse_global_order_reader.h | 166 unsigned int frag_idx, 191 unsigned frag_idx, std::list<ResultTile>::iterator rt);
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H A D | result_tile.cc | 53 unsigned frag_idx, uint64_t tile_idx, const Domain* domain) in ResultTile() argument 55 , frag_idx_(frag_idx) in ResultTile() 218 unsigned ResultTile::frag_idx() const { in frag_idx() function in tiledb::sm::ResultTile 343 unsigned frag_idx, in compute_results_dense() argument 371 for (auto f = frag_idx + 1; f < frag_num && !overwritten; ++f) { in compute_results_dense() 418 for (auto f = frag_idx + 1; f < frag_num && !overwritten; ++f) { in compute_results_dense() 925 unsigned frag_idx, in compute_results_dense() argument 934 frag_idx, in compute_results_dense()
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/dports/science/libefp/libefp-1.5.0/src/ |
H A D | efp.h | 523 enum efp_result efp_set_frag_coordinates(struct efp *efp, size_t frag_idx, 554 enum efp_result efp_get_frag_xyzabc(struct efp *efp, size_t frag_idx, 607 enum efp_result efp_get_ai_screen(struct efp *efp, size_t frag_idx, 686 enum efp_result efp_get_frag_charge(struct efp *efp, size_t frag_idx, 829 enum efp_result efp_get_lmo_count(struct efp *efp, size_t frag_idx, 846 enum efp_result efp_get_lmo_coordinates(struct efp *efp, size_t frag_idx, 945 enum efp_result efp_get_frag_mass(struct efp *efp, size_t frag_idx, 961 enum efp_result efp_get_frag_inertia(struct efp *efp, size_t frag_idx, 976 enum efp_result efp_get_frag_atom_count(struct efp *efp, size_t frag_idx, 994 enum efp_result efp_get_frag_atoms(struct efp *efp, size_t frag_idx, [all …]
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H A D | efp.c | 748 assert(frag_idx < efp->n_frag); in efp_set_frag_coordinates() 750 frag = efp->frags + frag_idx; in efp_set_frag_coordinates() 792 assert(frag_idx < efp->n_frag); in efp_get_frag_xyzabc() 795 frag = efp->frags + frag_idx; in efp_get_frag_xyzabc() 865 assert(frag_idx < efp->n_frag); in efp_get_ai_screen() 867 frag = &efp->frags[frag_idx]; in efp_get_ai_screen() 1020 assert(frag_idx < efp->n_frag); in efp_get_frag_charge() 1022 frag = efp->frags + frag_idx; in efp_get_frag_charge() 1190 frag = efp->frags + frag_idx; in efp_get_lmo_coordinates() 1209 frag = efp->frags + frag_idx; in efp_get_xrfit() [all …]
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H A D | pol.c | 119 const struct frag *fr_j = efp->frags + frag_idx; in get_elec_field() 124 if (i == frag_idx || efp_skip_frag_pair(efp, i, frag_idx)) in get_elec_field() 292 struct frag *fr_i = efp->frags + frag_idx; in get_induced_dipole_field() 298 if (j == frag_idx || efp_skip_frag_pair(efp, frag_idx, j)) in get_induced_dipole_field() 487 const struct frag *fr_i = efp->frags + frag_idx; in compute_grad_point() 500 if (j == frag_idx || efp_skip_frag_pair(efp, frag_idx, j)) in compute_grad_point() 548 efp_add_force(efp->grad + frag_idx, CVEC(fr_i->x), in compute_grad_point() 689 six_atomic_add_xyz(efp->grad + frag_idx, &force); in compute_grad_point() 760 assert(frag_idx < efp->n_frag); in efp_get_electric_field() 764 const struct frag *frag = efp->frags + frag_idx; in efp_get_electric_field() [all …]
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/dports/science/libefp/libefp-1.5.0/interface/ |
H A D | efp.f90 | 237 integer(c_size_t), value :: frag_idx 255 integer(c_size_t), value :: frag_idx 282 integer(c_size_t), value :: frag_idx 329 integer(c_size_t), value :: frag_idx 338 integer(c_size_t), value :: frag_idx 347 integer(c_size_t), value :: frag_idx 412 integer(c_size_t), value :: frag_idx 421 integer(c_size_t), value :: frag_idx 430 integer(c_size_t), value :: frag_idx 463 integer(c_size_t), value :: frag_idx [all …]
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/ucg/builtin/ops/ |
H A D | builtin_comp_step.inl | 33 unsigned frag_idx; local 35 for (frag_idx = 0; frag_idx < req->step->fragments; frag_idx++) { 36 ucs_assert(req->step->fragment_pending[frag_idx] == 0);
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H A D | builtin_data.c | 369 unsigned frag_idx = 0; \ 370 while ((frag_idx < step->fragments) && \ 371 (step->fragment_pending[frag_idx] == \ 373 frag_idx++; \ 375 ucs_assert(frag_idx < step->fragments); \ 376 step->iter_offset = frag_idx * step->fragment_length; \
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
H A D | CSRA1_Read.c | 65 …ic bool CSRA1_ReadFragIsAligned ( CSRA1_Read * self, ctx_t ctx, uint32_t frag_idx ); 378 if ( self -> frag_idx >= self -> frag_max ) in CSRA1_FragmentIsAligned() 398 return orig[self -> frag_idx] != 0; in CSRA1_FragmentIsAligned() 404 bool CSRA1_ReadFragIsAligned ( CSRA1_Read * cself, ctx_t ctx, uint32_t frag_idx ) in CSRA1_ReadFragIsAligned() argument 425 if ( frag_idx >= self -> bio_frags ) in CSRA1_ReadFragIsAligned() 448 return orig [ frag_idx ] != 0; in CSRA1_ReadFragIsAligned() 454 if ( bidx == frag_idx ) in CSRA1_ReadFragIsAligned() 489 self -> frag_idx = 0; in CSRA1_ReadIteratorNext()
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H A D | SRA_Read.c | 520 bool SRA_ReadFragIsAligned ( SRA_Read * self, ctx_t ctx, uint32_t frag_idx ) in SRA_ReadFragIsAligned() argument 538 if ( frag_idx >= self -> bio_frags ) in SRA_ReadFragIsAligned() 690 self -> frag_idx = 0; in SRA_ReadIteratorNext() 921 ++ self -> frag_idx; in SRA_FragmentNext() 925 for ( self -> seen_first_frag = true; self -> frag_idx < self -> frag_max; ++ self -> frag_idx ) in SRA_FragmentNext() 927 if ( self -> READ_LEN [ self -> frag_idx ] != 0 ) in SRA_FragmentNext() 931 self -> frag_len = self -> READ_LEN [ self -> frag_idx ]; in SRA_FragmentNext() 936 if ( ( self -> READ_TYPE [ self -> frag_idx ] & READ_TYPE_BIOLOGICAL ) != 0 ) in SRA_FragmentNext()
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H A D | NGS_Read.c | 84 … ITF_Read_v1_frag_is_aligned ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint32_t frag_idx ) in ITF_Read_v1_frag_is_aligned() argument 87 ON_FAIL ( bool ret = NGS_ReadFragIsAligned ( Self ( self ), ctx, frag_idx ) ) in ITF_Read_v1_frag_is_aligned() 304 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NGS_ReadFragIsAligned() argument 313 return VT ( self, frag_is_aligned ) ( self, ctx, frag_idx ); in NGS_ReadFragIsAligned() 443 static bool NullRead_FragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NullRead_FragIsAligned() argument
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H A D | NGS_Read.h | 129 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ); 166 … bool ( * frag_is_aligned ) ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
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H A D | SRA_Read.h | 92 uint32_t frag_idx; member 123 bool SRA_ReadFragIsAligned ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
H A D | CSRA1_Read.c | 65 …ic bool CSRA1_ReadFragIsAligned ( CSRA1_Read * self, ctx_t ctx, uint32_t frag_idx ); 378 if ( self -> frag_idx >= self -> frag_max ) in CSRA1_FragmentIsAligned() 398 return orig[self -> frag_idx] != 0; in CSRA1_FragmentIsAligned() 404 bool CSRA1_ReadFragIsAligned ( CSRA1_Read * cself, ctx_t ctx, uint32_t frag_idx ) in CSRA1_ReadFragIsAligned() argument 425 if ( frag_idx >= self -> bio_frags ) in CSRA1_ReadFragIsAligned() 448 return orig [ frag_idx ] != 0; in CSRA1_ReadFragIsAligned() 454 if ( bidx == frag_idx ) in CSRA1_ReadFragIsAligned() 489 self -> frag_idx = 0; in CSRA1_ReadIteratorNext()
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H A D | SRA_Read.c | 520 bool SRA_ReadFragIsAligned ( SRA_Read * self, ctx_t ctx, uint32_t frag_idx ) in SRA_ReadFragIsAligned() argument 538 if ( frag_idx >= self -> bio_frags ) in SRA_ReadFragIsAligned() 690 self -> frag_idx = 0; in SRA_ReadIteratorNext() 921 ++ self -> frag_idx; in SRA_FragmentNext() 925 for ( self -> seen_first_frag = true; self -> frag_idx < self -> frag_max; ++ self -> frag_idx ) in SRA_FragmentNext() 927 if ( self -> READ_LEN [ self -> frag_idx ] != 0 ) in SRA_FragmentNext() 931 self -> frag_len = self -> READ_LEN [ self -> frag_idx ]; in SRA_FragmentNext() 936 if ( ( self -> READ_TYPE [ self -> frag_idx ] & READ_TYPE_BIOLOGICAL ) != 0 ) in SRA_FragmentNext()
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H A D | NGS_Read.c | 84 … ITF_Read_v1_frag_is_aligned ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint32_t frag_idx ) in ITF_Read_v1_frag_is_aligned() argument 87 ON_FAIL ( bool ret = NGS_ReadFragIsAligned ( Self ( self ), ctx, frag_idx ) ) in ITF_Read_v1_frag_is_aligned() 304 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NGS_ReadFragIsAligned() argument 313 return VT ( self, frag_is_aligned ) ( self, ctx, frag_idx ); in NGS_ReadFragIsAligned() 443 static bool NullRead_FragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ) in NullRead_FragIsAligned() argument
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H A D | NGS_Read.h | 129 bool NGS_ReadFragIsAligned ( NGS_Read * self, ctx_t ctx, uint32_t frag_idx ); 166 … bool ( * frag_is_aligned ) ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
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H A D | SRA_Read.h | 92 uint32_t frag_idx; member 123 bool SRA_ReadFragIsAligned ( NGS_READ * self, ctx_t ctx, uint32_t frag_idx );
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/dports/science/libefp/libefp-1.5.0/efpmd/src/ |
H A D | efield.c | 32 print_field(size_t frag_idx, const struct efp_atom *atom, const double *field) in print_field() argument 36 frag_idx); in print_field()
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/dports/sysutils/fusefs-squashfuse/squashfuse-0.1.103/ |
H A D | file.c | 55 err = sqfs_frag_entry(fs, &frag, inode->xtra.reg.frag_idx); in sqfs_frag_block() 72 if (inode->xtra.reg.frag_idx == SQUASHFS_INVALID_FRAG) { in sqfs_blocklist_count() 150 if (inode->xtra.reg.frag_idx == SQUASHFS_INVALID_FRAG) in sqfs_read_range()
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