Searched refs:free_mixt_rates (Results 1 – 10 of 10) sorted by relevance
709 " %-15s \n",(io->mod->ras->free_mixt_rates)?("no"):("yes")); in Launch_Interface_Model()713 if((io->mod->ras->n_catg > 1) && (io->mod->ras->free_mixt_rates == NO)) in Launch_Interface_Model()760 io->mod->ras->free_mixt_rates = (io->mod->ras->free_mixt_rates)?(NO):(YES); in Launch_Interface_Model()
2143 PhyML_Printf("\n. free_mixt_rates=%d",mod->ras->free_mixt_rates); in Print_Model()2383 if(tree->mod->ras->free_mixt_rates == NO) in Print_Fp_Out()2393 else if(tree->mod->ras->free_mixt_rates == YES) in Print_Fp_Out()2896 if(io->mod->ras->free_mixt_rates == NO) in Print_Settings()2906 if(io->mod->ras->free_mixt_rates == NO) in Print_Settings()4035 mixt_tree->mod->ras->free_mixt_rates?"FreeRates": in Print_Data_Structure()4037 if(mixt_tree->mod->ras->free_mixt_rates == NO) in Print_Data_Structure()5271 mod->ras->free_mixt_rates = YES; in Make_RAS_From_XML_Node()
682 if(mod->ras->free_mixt_rates == NO) in Update_RAS()804 if(mod->ras->free_mixt_rates == YES) in Update_Boundaries()
2226 tree->mod->ras->free_mixt_rates == NO) in Optimiz_Alpha_And_Pinv()2245 tree->mod->ras->free_mixt_rates == NO) in Optimiz_Alpha_And_Pinv()3030 tree->mod->ras->free_mixt_rates == NO && in Optimize_Alpha()3075 …if((tree->mod->s_opt->opt_free_mixt_rates) && (tree->mod->ras->free_mixt_rates == YES) && (tree->m… in Optimize_Free_Rate()
390 io->mod->ras->free_mixt_rates = YES; in Read_Command_Line()
1052 int free_mixt_rates; member
770 if(tree->mod->ras->free_mixt_rates == NO) PhyML_Fprintf(fp_stats,"alpha\t"); in PHYREX_MCMC()899 … if(tree->mod->ras->free_mixt_rates == NO) PhyML_Fprintf(fp_stats,"%g\t",tree->mod->ras->alpha->v); in PHYREX_MCMC()
2350 if(tree->mod->ras->free_mixt_rates == NO) PhyML_Fprintf(fp,"Alpha\t"); in MCMC_Print_Param()2494 if(tree->mod->ras->free_mixt_rates == NO) in MCMC_Print_Param()2918 if(tree->mod->ras->free_mixt_rates == YES) in MCMC_Randomize_Rate_Across_Sites()3781 if(tree->mod->ras->free_mixt_rates == YES) MCMC_Free_Mixt_Rate(tree); in MCMC_Rate_Across_Sites()
696 ras->free_mixt_rates = NO; in Set_Defaults_Ras()
3763 cpy->ras->free_mixt_rates = ori->ras->free_mixt_rates; in Record_Model()