Searched refs:freqRatios (Results 1 – 20 of 20) sorted by relevance
/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/src/ |
H A D | SpectrumTools.cpp | 89 vector <double> freqRatios(MAFs.size()); in computeFreqRatios() local 92 freqRatios[m] = in computeFreqRatios() 94 if (MAFs[m] != 0 && freqRatios[m] > maxMultiplier) in computeFreqRatios() 95 maxMultiplier = freqRatios[m]; in computeFreqRatios() 98 freqRatios[m] /= maxMultiplier; in computeFreqRatios() 99 return freqRatios; in computeFreqRatios()
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H A D | PhenoBuilder.cpp | 125 vector <double> freqRatios(M, 1.0); in genPhenoCausal() local 129 freqRatios = in genPhenoCausal() 172 if ((highH2Chroms.count(snps[m].chrom) && m < m_mid && freqRatios[m] > 1e-4) in genPhenoCausal() 191 if (rand() < freqRatios[m]) { // downsample to match MAF hist from MAFhistFile in genPhenoCausal()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/data/ |
H A D | pssm_zero_fratios.asn | 6 freqRatios {
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H A D | pssm_freq_ratios.asn | 74 freqRatios {
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H A D | webpsi.2ndround.ss.asn | 39 freqRatios {
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/data/ |
H A D | pssm_zero_fratios.asn | 6 freqRatios {
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H A D | pssm_freq_ratios.asn | 74 freqRatios {
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H A D | webpsi.2ndround.ss.asn | 39 freqRatios {
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/dports/biology/hmmer/hmmer-3.3/easel/demotic/examples/ |
H A D | example-single.asnt | 25 freqRatios {
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/dports/biology/infernal/infernal-1.1.3/easel/demotic/examples/ |
H A D | example-single.asnt | 25 freqRatios {
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
H A D | blast_input.c | 477 if (freqs->freqRatios == NULL) { in s_PosReadAsnCheckpoint() 576 freq_list = freqs->freqRatios; in s_PosReadAsnCheckpoint()
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | kappa.c | 2091 FreqRatios * freqRatios; /* frequency ratios for the matrix */ in Kappa_MatrixInfoInit() local 2093 freqRatios = PSIMatrixFrequencyRatiosNew(matrixName); in Kappa_MatrixInfoInit() 2094 if (freqRatios == NULL) { in Kappa_MatrixInfoInit() 2098 Blast_Int4MatrixFromFreq(self->startMatrix, self->cols, freqRatios->data, in Kappa_MatrixInfoInit() 2100 freqRatios = PSIMatrixFrequencyRatiosFree(freqRatios); in Kappa_MatrixInfoInit()
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H A D | posit.c | 2652 ValNodeAddFloat(&freqs->freqRatios, 0, posSearch->posFreqs[i][j]); in posTakeScoremat() 2734 if (freqs->freqRatios == NULL) { in posReadPosFreqsScoremat() 2831 freq_list = freqs->freqRatios; in posReadPosFreqsScoremat()
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/dports/biology/ncbi-toolkit/ncbi/object/ |
H A D | objscoremat.h | 61 ValNodePtr freqRatios; member
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H A D | objscoremat.c | 317 AsnGenericBaseSeqOfFree(ptr -> freqRatios ,ASNCODE_REALVAL_SLOT); in PssmIntermediateDataFree() 389 ptr -> freqRatios = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_REALVAL_SLOT, &isError); in PssmIntermediateDataAsnRead() 390 if (isError && ptr -> freqRatios == NULL) { in PssmIntermediateDataAsnRead() 483 …retval = AsnGenericBaseSeqOfAsnWrite(ptr -> freqRatios ,ASNCODE_REALVAL_SLOT, aip, PSSMINTERMEDIAT… in PssmIntermediateDataAsnWrite()
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/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | formatrpsdb.c | 405 freq_list = pssm->intermediateData->freqRatios; in RPSUpdateStatistics() 812 pssm->intermediateData->freqRatios == NULL) { in RPSAddSequence()
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/dports/biology/ncbi-toolkit/ncbi/asn/ |
H A D | scoremat.asn | 209 freqRatios SEQUENCE OF REAL,
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H A D | asn.all | 4988 freqRatios SEQUENCE OF REAL,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/scoremat/ |
H A D | scoremat.asn | 212 freqRatios SEQUENCE OF REAL,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/scoremat/ |
H A D | scoremat.asn | 212 freqRatios SEQUENCE OF REAL,
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