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Searched refs:freqRatios (Results 1 – 20 of 20) sorted by relevance

/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/src/
H A DSpectrumTools.cpp89 vector <double> freqRatios(MAFs.size()); in computeFreqRatios() local
92 freqRatios[m] = in computeFreqRatios()
94 if (MAFs[m] != 0 && freqRatios[m] > maxMultiplier) in computeFreqRatios()
95 maxMultiplier = freqRatios[m]; in computeFreqRatios()
98 freqRatios[m] /= maxMultiplier; in computeFreqRatios()
99 return freqRatios; in computeFreqRatios()
H A DPhenoBuilder.cpp125 vector <double> freqRatios(M, 1.0); in genPhenoCausal() local
129 freqRatios = in genPhenoCausal()
172 if ((highH2Chroms.count(snps[m].chrom) && m < m_mid && freqRatios[m] > 1e-4) in genPhenoCausal()
191 if (rand() < freqRatios[m]) { // downsample to match MAF hist from MAFhistFile in genPhenoCausal()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/data/
H A Dpssm_zero_fratios.asn6 freqRatios {
H A Dpssm_freq_ratios.asn74 freqRatios {
H A Dwebpsi.2ndround.ss.asn39 freqRatios {
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/data/
H A Dpssm_zero_fratios.asn6 freqRatios {
H A Dpssm_freq_ratios.asn74 freqRatios {
H A Dwebpsi.2ndround.ss.asn39 freqRatios {
/dports/biology/hmmer/hmmer-3.3/easel/demotic/examples/
H A Dexample-single.asnt25 freqRatios {
/dports/biology/infernal/infernal-1.1.3/easel/demotic/examples/
H A Dexample-single.asnt25 freqRatios {
/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_input.c477 if (freqs->freqRatios == NULL) { in s_PosReadAsnCheckpoint()
576 freq_list = freqs->freqRatios; in s_PosReadAsnCheckpoint()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dkappa.c2091 FreqRatios * freqRatios; /* frequency ratios for the matrix */ in Kappa_MatrixInfoInit() local
2093 freqRatios = PSIMatrixFrequencyRatiosNew(matrixName); in Kappa_MatrixInfoInit()
2094 if (freqRatios == NULL) { in Kappa_MatrixInfoInit()
2098 Blast_Int4MatrixFromFreq(self->startMatrix, self->cols, freqRatios->data, in Kappa_MatrixInfoInit()
2100 freqRatios = PSIMatrixFrequencyRatiosFree(freqRatios); in Kappa_MatrixInfoInit()
H A Dposit.c2652 ValNodeAddFloat(&freqs->freqRatios, 0, posSearch->posFreqs[i][j]); in posTakeScoremat()
2734 if (freqs->freqRatios == NULL) { in posReadPosFreqsScoremat()
2831 freq_list = freqs->freqRatios; in posReadPosFreqsScoremat()
/dports/biology/ncbi-toolkit/ncbi/object/
H A Dobjscoremat.h61 ValNodePtr freqRatios; member
H A Dobjscoremat.c317 AsnGenericBaseSeqOfFree(ptr -> freqRatios ,ASNCODE_REALVAL_SLOT); in PssmIntermediateDataFree()
389 ptr -> freqRatios = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_REALVAL_SLOT, &isError); in PssmIntermediateDataAsnRead()
390 if (isError && ptr -> freqRatios == NULL) { in PssmIntermediateDataAsnRead()
483 …retval = AsnGenericBaseSeqOfAsnWrite(ptr -> freqRatios ,ASNCODE_REALVAL_SLOT, aip, PSSMINTERMEDIAT… in PssmIntermediateDataAsnWrite()
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dformatrpsdb.c405 freq_list = pssm->intermediateData->freqRatios; in RPSUpdateStatistics()
812 pssm->intermediateData->freqRatios == NULL) { in RPSAddSequence()
/dports/biology/ncbi-toolkit/ncbi/asn/
H A Dscoremat.asn209 freqRatios SEQUENCE OF REAL,
H A Dasn.all4988 freqRatios SEQUENCE OF REAL,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/scoremat/
H A Dscoremat.asn212 freqRatios SEQUENCE OF REAL,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/scoremat/
H A Dscoremat.asn212 freqRatios SEQUENCE OF REAL,