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Searched refs:gQuiet (Results 1 – 8 of 8) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dsearch_globals.h31 extern int gQuiet;
H A Dbt2_search.cpp276 gQuiet = false; in resetOptions()
1269 case ARG_QUIET: gQuiet = true; break; in parseOption()
1731 if(mates1[i] == mates2[j] && !gQuiet) { in parseOptions()
1743 if(useShmem && useMm && !gQuiet) { in parseOptions()
1769 if(!gQuiet) { in parseOptions()
2861 if(!gQuiet) printLocalScoreMsg(ps, paired, true); in setupMinScores()
2870 if(!gQuiet) printEEScoreMsg(ps, paired, true); in setupMinScores()
2874 if(!gQuiet) printEEScoreMsg(ps, paired, false); in setupMinScores()
4333 if(!gQuiet) printLenSkipMsg(*ps, paired, true); in multiseedSearchWorker_2p5()
4337 if(!gQuiet) printLenSkipMsg(*ps, paired, false); in multiseedSearchWorker_2p5()
[all …]
H A Dbt2_dp.cpp32 int gQuiet; // print nothing but the alignments variable
66 gQuiet = false; in resetOptions()
293 case ARG_QUIET: gQuiet = true; break; in parseOption()
505 if(!gQuiet) { in parseOptions()
/dports/biology/hisat2/hisat2-2.2.1/
H A Dsearch_globals.h36 extern int gQuiet;
H A Dhisat_bp.cpp71 int gQuiet; // print nothing but the alignments variable
270 gQuiet = false; in resetOptions()
1165 case ARG_QUIET: gQuiet = true; break; in parseOption()
1619 if(mates1[i] == mates2[j] && !gQuiet) { in parseOptions()
1631 if(useShmem && useMm && !gQuiet) { in parseOptions()
1650 if(!gQuiet) { in parseOptions()
3064 if(!gQuiet) printEEScoreMsg(*ps, paired, true); in multiseedSearchWorker_hisat_bp()
3068 if(!gQuiet) printEEScoreMsg(*ps, paired, false); in multiseedSearchWorker_hisat_bp()
3097 if(!gQuiet) printLenSkipMsg(*ps, paired, true); in multiseedSearchWorker_hisat_bp()
3101 if(!gQuiet) printLenSkipMsg(*ps, paired, false); in multiseedSearchWorker_hisat_bp()
[all …]
H A Dhisat2.cpp72 int gQuiet; // print nothing but the alignments variable
313 gQuiet = false; in resetOptions()
1324 case ARG_QUIET: gQuiet = true; break; in parseOption()
1950 if(mates1[i] == mates2[j] && !gQuiet) { in parseOptions()
1962 if(useShmem && useMm && !gQuiet) { in parseOptions()
1981 if(!gQuiet) { in parseOptions()
3390 if(!gQuiet) printEEScoreMsg(*ps, paired, true); in multiseedSearchWorker_hisat2()
3394 if(!gQuiet) printEEScoreMsg(*ps, paired, false); in multiseedSearchWorker_hisat2()
3423 if(!gQuiet) printLenSkipMsg(*ps, paired, true); in multiseedSearchWorker_hisat2()
3427 if(!gQuiet) printLenSkipMsg(*ps, paired, false); in multiseedSearchWorker_hisat2()
[all …]
/dports/lang/nqc/nqc-3.1.r6_1/rcxlib/
H A DRCX_Link.cpp54 extern bool gQuiet;
237 if (!gQuiet) // play sound when done in Download()
595 if (!gQuiet || gProgramMode) in Download()
/dports/lang/nqc/nqc-3.1.r6_1/nqc/
H A Dnqc.cpp220 bool gQuiet = false; variable
378 gQuiet = true; in ProcessCommandLine()