Searched refs:gapsPattern (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/pairwise_sequence_alignment/ |
| H A D | assignment5_step4.cpp | 31 TGaps gapsPattern; in main() local
32 assignSource(gapsPattern, pattern); in main()
38 clearGaps(gapsPattern); in main()
46 …int score = globalAlignment(gapsText, gapsPattern, Score<int>(0, -1, -1), AlignConfig<true, false,… in main()
48 TGapsIterator itGapsPattern = begin(gapsPattern); in main()
49 TGapsIterator itGapsEnd = end(gapsPattern); in main()
55 setClippedEndPosition(gapsPattern, length(gapsPattern) - count); in main()
60 setClippedBeginPosition(gapsPattern, countGaps(itGapsPattern)); in main()
66 itGapsPattern = begin(gapsPattern); in main()
67 itGapsEnd = end(gapsPattern); in main()
|
| H A D | assignment5_step5.cpp | 31 TGaps gapsPattern; in main() local
32 assignSource(gapsPattern, pattern); in main()
38 clearGaps(gapsPattern); in main()
46 …int score = globalAlignment(gapsText, gapsPattern, Score<int>(0, -1, -1), AlignConfig<true, false,… in main()
48 TGapsIterator itGapsPattern = begin(gapsPattern); in main()
49 TGapsIterator itGapsEnd = end(gapsPattern); in main()
55 setClippedEndPosition(gapsPattern, length(gapsPattern) - count); in main()
60 setClippedBeginPosition(gapsPattern, countGaps(itGapsPattern)); in main()
66 itGapsPattern = begin(gapsPattern); in main()
67 itGapsEnd = end(gapsPattern); in main()
|
| H A D | assignment5.cpp | 35 TGaps gapsPattern; in main() local
36 assignSource(gapsPattern, pattern); in main()
42 clearGaps(gapsPattern); in main()
49 …int score = globalAlignment(gapsText, gapsPattern, Score<int>(0, -1, -1), AlignConfig<true, false,… in main()
53 TGapsIterator itGapsPattern = begin(gapsPattern); in main()
54 TGapsIterator itGapsEnd = end(gapsPattern); in main()
60 setClippedEndPosition(gapsPattern, length(gapsPattern) - count); in main()
65 setClippedBeginPosition(gapsPattern, countGaps(itGapsPattern)); in main()
71 itGapsPattern = begin(gapsPattern); in main()
72 itGapsEnd = end(gapsPattern); in main()
|
| H A D | assignment5_step6.cpp | 31 TGaps gapsPattern; in main() local
32 assignSource(gapsPattern, pattern); in main()
38 clearGaps(gapsPattern); in main()
46 …int score = globalAlignment(gapsText, gapsPattern, Score<int>(0, -1, -1), AlignConfig<true, false,… in main()
48 TGapsIterator itGapsPattern = begin(gapsPattern); in main()
49 TGapsIterator itGapsEnd = end(gapsPattern); in main()
55 setClippedEndPosition(gapsPattern, length(gapsPattern) - count); in main()
60 setClippedBeginPosition(gapsPattern, countGaps(itGapsPattern)); in main()
66 itGapsPattern = begin(gapsPattern); in main()
67 itGapsEnd = end(gapsPattern); in main()
|
| H A D | assignment5_step3.cpp | 31 TGaps gapsPattern; in main() local
32 assignSource(gapsPattern, pattern); in main()
38 clearGaps(gapsPattern); in main()
46 …int score = globalAlignment(gapsText, gapsPattern, Score<int>(0, -1, -1), AlignConfig<true, false,… in main()
48 TGapsIterator itGapsPattern = begin(gapsPattern); in main()
49 TGapsIterator itGapsEnd = end(gapsPattern); in main()
55 setClippedEndPosition(gapsPattern, length(gapsPattern) - count); in main()
60 setClippedBeginPosition(gapsPattern, countGaps(itGapsPattern)); in main()
|
| H A D | assignment5_step2.cpp | 30 TGaps gapsPattern; in main() local
31 assignSource(gapsPattern, pattern); in main()
37 clearGaps(gapsPattern); in main()
45 …int score = globalAlignment(gapsText, gapsPattern, Score<int>(0, -1, -1), AlignConfig<true, false,… in main()
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/source/Tutorial/Algorithms/Alignment/ |
| H A D | PairwiseSequenceAlignment.rst | 521 …We have to remove leading and trailing gaps in the `gapsPattern` object using the functions :dox:`…
|