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Searched refs:gbuffer (Results 1 – 25 of 79) sorted by relevance

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/dports/biology/gmap/gmap-2020-09-12/src/
H A Dindel.c74 char *gbuffer; in Indel_resolve_middle_insertion() local
157 FREE(gbuffer); in Indel_resolve_middle_insertion()
391 char *gbuffer; in Indel_resolve_middle_deletion() local
474 FREE(gbuffer); in Indel_resolve_middle_deletion()
675 char *gbuffer; in Indel_resolve_middle_deletion_or_splice() local
860 … gbuffer[indel_pos],gbuffer[indel_pos+1],gbuffer[indel_pos-indels-2],gbuffer[indel_pos-indels-1])); in Indel_resolve_middle_deletion_or_splice()
922 … gbuffer[indel_pos],gbuffer[indel_pos+1],gbuffer[indel_pos-indels-2],gbuffer[indel_pos-indels-1])); in Indel_resolve_middle_deletion_or_splice()
1020 FREE(gbuffer); in Indel_resolve_middle_deletion_or_splice()
1094 char *gbuffer; in Indel_solve_end_low() local
1127 FREE(gbuffer); in Indel_solve_end_low()
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H A Dgenome.c10129 if (gbuffer[k] > 3) { in uncompress_mmap_nucleotides()
10309 if (gbuffer[k] > 3) { in uncompress_mmap_int_string()
10488 if (gbuffer[k] > 3) { in uncompress_mmap_int_string_convert()
10921 gbuffer[length] = 0xFF; in Genome_fill_buffer_nucleotides()
11223 char *gbuffer; in Genome_get_segment() local
11251 char *gbuffer; in Genome_get_segment_alt() local
11279 char *gbuffer; in Genome_get_segment_snp() local
11304 char *gbuffer, *p; in Genome_ntcounts() local
11337 p = &(gbuffer[0]); in Genome_ntcounts()
11347 FREE(gbuffer); in Genome_ntcounts()
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H A Dterminal.c67 char *gbuffer; in find_terminals() local
134 gbuffer = (char *) CALLOC(querylength+1,sizeof(char)); in find_terminals()
136 printf("genome 0..: %s\n",gbuffer); in find_terminals()
164 debug4e(printf("q: %s\ng: %s\n",queryptr,gbuffer)); in find_terminals()
178 debug4e(printf("q: %s\ng: %s\n",queryptr,gbuffer)); in find_terminals()
183 debug4e(FREE(gbuffer)); in find_terminals()
203 gbuffer = (char *) CALLOC(querylength+1,sizeof(char)); in find_terminals()
205 printf("genome 0..: %s\n",gbuffer); in find_terminals()
233 debug4e(printf("q: %s\ng: %s\n",queryptr,gbuffer)); in find_terminals()
247 debug4e(printf("q: %s\ng: %s\n",queryptr,gbuffer)); in find_terminals()
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H A Dget-genome.c581 char *gbuffer; in genemap_print_exons() local
613 FREE(gbuffer); in genemap_print_exons()
627 char *gbuffer; in genemap_print_sequence() local
663 putchar(gbuffer[i]); in genemap_print_sequence()
669 FREE(gbuffer); in genemap_print_sequence()
687 char *gbuffer; in genemap_print_gsequence() local
715 FREE(gbuffer); in genemap_print_gsequence()
720 printf("%s\n",gbuffer); in genemap_print_gsequence()
721 FREE(gbuffer); in genemap_print_gsequence()
733 FREE(gbuffer); in genemap_print_gsequence()
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H A Dsubstring.c754 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_cmet_gsnap()
768 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_cmet_gsnap()
798 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_cmet_sam()
815 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_cmet_sam()
843 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_atoi_gsnap()
857 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_atoi_gsnap()
888 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_atoi_sam()
905 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_atoi_sam()
932 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_ttoc_gsnap()
946 gbuffer[i] = (char) tolower(gbuffer[i]); in mark_mismatches_ttoc_gsnap()
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H A Dcompress-write.c345 Compress_update_file (int nbadchars, FILE *fp, char *gbuffer, Univcoord_T startpos, in Compress_update_file() argument
375 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_file()
396 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_file()
404 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_file()
425 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_file()
437 Compress_update_memory (int nbadchars, Genomecomp_T *genomecomp, char *gbuffer, Univcoord_T startpo… in Compress_update_memory() argument
469 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_memory()
491 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_memory()
498 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_memory()
521 Buffer[i] = gbuffer ? *gbuffer++ : 'X'; in Compress_update_memory()
H A Ddistant-rna.c146 char *gbuffer; in find_spliceends_rna_plus() local
194 printf("genome 0..: %s\n",gbuffer); in find_spliceends_rna_plus()
196 FREE(gbuffer); in find_spliceends_rna_plus()
291 debug4e(printf("q: %s\ng: %s\n",queryptr,gbuffer)); in find_spliceends_rna_plus()
427 printf("genome 0..: %s\n",gbuffer); in find_spliceends_rna_plus()
429 FREE(gbuffer); in find_spliceends_rna_plus()
662 char *gbuffer; in find_spliceends_rna_minus() local
710 printf("genome 0..: %s\n",gbuffer); in find_spliceends_rna_minus()
712 FREE(gbuffer); in find_spliceends_rna_minus()
945 printf("genome 0..: %s\n",gbuffer); in find_spliceends_rna_minus()
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H A Dcompress-write.h14 Compress_update_file (int nbadchars, FILE *fp, char *gbuffer, Univcoord_T startpos,
17 Compress_update_memory (int nbadchars, Genomecomp_T *genomecomp, char *gbuffer, Univcoord_T startpo…
H A Dcompress.h43 Compress_new_fwd (char *gbuffer, Chrpos_T length);
45 Compress_new_rev (char *gbuffer, Chrpos_T length);
/dports/audio/deadbeef/deadbeef-0.7.2/plugins/shn/
H A Dvario.c40 this_shn->decode_state->gbuffer = 0; in var_get_init()
85 this_shn->decode_state->gbuffer = word_get(this_shn); in uvar_get()
91 …for(result = 0; !(this_shn->decode_state->gbuffer & (1L << --(this_shn->decode_state->nbitget))); … in uvar_get()
95 this_shn->decode_state->gbuffer = word_get(this_shn); in uvar_get()
106 …result = (result << nbin) | ((this_shn->decode_state->gbuffer >> (this_shn->decode_state->nbitget-… in uvar_get()
112 …result = (result << this_shn->decode_state->nbitget) | (this_shn->decode_state->gbuffer & masktab[… in uvar_get()
113 this_shn->decode_state->gbuffer = word_get(this_shn); in uvar_get()
/dports/science/plumed/plumed2-2.7.2/src/gridtools/
H A DFindContour.cpp97 unsigned gbuffer; member in PLMD::gridtools::FindContour
107 bool checkAllActive() const override { return gbuffer==0; } in checkAllActive()
132 parse("BUFFER",gbuffer); in FindContour()
133 …if( gbuffer>0 ) log.printf(" after first step a subset of only %u grid points around where the co… in FindContour()
222 if( gbuffer>0 ) { in finishAveraging()
226 std::vector<unsigned> gbuffer_vec( ingrid->getDimension(), gbuffer ); in finishAveraging()
H A DFindContourSurface.cpp91 unsigned gbuffer; member in PLMD::gridtools::FindContourSurface
99 bool checkAllActive() const override { return gbuffer==0; } in checkAllActive()
122 std::string dir; parse("SEARCHDIR",dir); parse("BUFFER",gbuffer); in FindContourSurface()
124 …if( gbuffer>0 ) log.printf(" after first step a subset of only %u grid points around where the co… in FindContourSurface()
187 if( gbuffer>0 ) { in finishAveraging()
194 std::vector<unsigned> gbuffer_vec( ingrid->getDimension(), gbuffer ); in finishAveraging()
/dports/graphics/mapcache/mapcache-1.10.0/lib/
H A Dgrid.c77 double gbuffer,gwidth,gheight,fullgwidth,fullgheight; in mapcache_grid_get_metatile_extent() local
104 gbuffer = res * tileset->metabuffer; in mapcache_grid_get_metatile_extent()
116 extent->minx = grid->extent.minx + mtx * fullgwidth - gbuffer; in mapcache_grid_get_metatile_extent()
117 extent->miny = grid->extent.miny + mty * fullgheight - gbuffer; in mapcache_grid_get_metatile_extent()
118 extent->maxx = extent->minx + gwidth + 2 * gbuffer; in mapcache_grid_get_metatile_extent()
119 extent->maxy = extent->miny + gheight + 2 * gbuffer; in mapcache_grid_get_metatile_extent()
122 extent->minx = grid->extent.minx + mtx * fullgwidth - gbuffer; in mapcache_grid_get_metatile_extent()
123 extent->maxy = grid->extent.maxy - mty * fullgheight + gbuffer; in mapcache_grid_get_metatile_extent()
124 extent->maxx = extent->minx + gwidth + 2 * gbuffer; in mapcache_grid_get_metatile_extent()
125 extent->miny = extent->maxy - gheight - 2 * gbuffer; in mapcache_grid_get_metatile_extent()
/dports/graphics/ogre3d/ogre-1.11.6/Samples/Media/DeferredShadingMedia/
H A Ddeferred.compositor2 //! [gbuffer]
31 //! [gbuffer]
54 // render skies and other pre-gbuffer objects
68 //Render the objects that skipped rendering into the gbuffer
/dports/dns/getdns/getdns-1.5.2/src/
H A DMakefile.in86 GLDNS_OBJ=keyraw.lo gbuffer.lo wire2str.lo parse.lo parseutil.lo rrdef.lo \
317 …$(srcdir)/rr-iter.h $(srcdir)/rr-dict.h $(srcdir)/gldns/gbuffer.h $(srcdir)/gldns/pkthdr.h $(srcdi…
369 $(srcdir)/dict.h $(srcdir)/list.h $(srcdir)/util/val_secalgo.h $(srcdir)/gldns/gbuffer.h
424 $(srcdir)/gldns/gbuffer.h $(srcdir)/util-internal.h $(srcdir)/context.h \
433 $(srcdir)/gldns/gbuffer.h $(srcdir)/gldns/pkthdr.h $(srcdir)/gldns/rrdef.h
449 …$(srcdir)/util/rbtree.h $(srcdir)/util/orig-headers/rbtree.h $(srcdir)/gldns/gbuffer.h $(srcdir)/g…
479 gbuffer.lo gbuffer.o: $(srcdir)/gldns/gbuffer.c \
481 $(srcdir)/gldns/gbuffer.h
487 $(srcdir)/gldns/parse.h $(srcdir)/gldns/parseutil.h $(srcdir)/gldns/gbuffer.h
496 …ir)/gldns/str2wire.h $(srcdir)/gldns/rrdef.h $(srcdir)/gldns/wire2str.h $(srcdir)/gldns/gbuffer.h \
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/dports/science/plumed/plumed2-2.7.2/src/dimred/
H A DSketchMapPointwise.cpp98 double gbuffer = 0.5*gbuf*( gmax[j]-gmin[j] ) - 0.5*( gmax[j]- gmin[j] ); in minimise() local
99 gmin[j]-=gbuffer; gmax[j]+=gbuffer; in minimise()
/dports/games/stuntrally/stuntrally-2.6.1/data/compositor/softparticles/
H A Dsoftparticles.compositor7 texture_ref scene gbuffer mrt_output
60 texture_ref scene gbuffer mrt_output
/dports/lang/kawa/kawa-3.1.1/gnu/kawa/io/
H A DPrettyWriter.java1830 gbuffer.add('.'); in resolveBackReferences()
1831 gbuffer.add(' '); in resolveBackReferences()
1834 gbuffer.add('#'); in resolveBackReferences()
1845 delta += gbuffer.add(reference); in resolveBackReferences()
1846 gbuffer.add('='); in resolveBackReferences()
1851 gbuffer.add('('); in resolveBackReferences()
1869 gbuffer.add('#'); in resolveBackReferences()
1872 delta += gbuffer.add(count); in resolveBackReferences()
1873 gbuffer.add('#'); in resolveBackReferences()
1884 gbuffer.add(')'); in resolveBackReferences()
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/dports/dns/samba-nsupdate/bind-9.16.5/lib/dns/
H A Dgssapictx.c112 gss_buffer_desc *gbuffer) { in name_to_gbuffer() argument
132 REGION_TO_GBUFFER(r, *gbuffer); in name_to_gbuffer()
139 gss_buffer_desc gbuffer; in log_cred() local
151 gret = gss_display_name(&minor, gname, &gbuffer, NULL); in log_cred()
169 gss_log(3, "gss cred: \"%s\", %s, %lu", (char *)gbuffer.value, in log_cred()
174 if (gbuffer.length != 0U) { in log_cred()
175 gret = gss_release_buffer(&minor, &gbuffer); in log_cred()
/dports/security/cracklib/cracklib-2.9.7/lib/
H A Dfascist.c502 char gbuffer[STRINGSIZE]; in FascistGecosUser() local
523 strcpy(gbuffer, Lowercase(tbuffer)); in FascistGecosUser()
526 ptr = gbuffer; in FascistGecosUser()
537 if (ptr != gbuffer) in FascistGecosUser()
/dports/dns/bind-tools/bind-9.16.27/lib/dns/
H A Dgssapictx.c100 gss_buffer_desc *gbuffer) { in name_to_gbuffer() argument
120 REGION_TO_GBUFFER(r, *gbuffer); in name_to_gbuffer()
127 gss_buffer_desc gbuffer; in log_cred() local
140 gret = gss_display_name(&minor, gname, &gbuffer, NULL); in log_cred()
158 gss_log(3, "gss cred: \"%s\", %s, %lu", (char *)gbuffer.value, in log_cred()
163 if (gbuffer.length != 0U) { in log_cred()
164 gret = gss_release_buffer(&minor, &gbuffer); in log_cred()
/dports/dns/bind911/bind-9.11.37/lib/dns/
H A Dgssapictx.c102 gss_buffer_desc *gbuffer) in name_to_gbuffer() argument
123 REGION_TO_GBUFFER(r, *gbuffer); in name_to_gbuffer()
130 gss_buffer_desc gbuffer; in log_cred() local
142 gret = gss_display_name(&minor, gname, &gbuffer, NULL); in log_cred()
160 gss_log(3, "gss cred: \"%s\", %s, %lu", (char *)gbuffer.value, in log_cred()
165 if (gbuffer.length != 0U) { in log_cred()
166 gret = gss_release_buffer(&minor, &gbuffer); in log_cred()
/dports/dns/bind9-devel/bind9-e112afa15668bd3b1baed59df2d21e01b46da15e/lib/dns/
H A Dgssapictx.c103 gss_buffer_desc *gbuffer) { in name_to_gbuffer() argument
123 REGION_TO_GBUFFER(r, *gbuffer); in name_to_gbuffer()
130 gss_buffer_desc gbuffer; in log_cred() local
142 gret = gss_display_name(&minor, gname, &gbuffer, NULL); in log_cred()
160 gss_log(3, "gss cred: \"%s\", %s, %lu", (char *)gbuffer.value, in log_cred()
165 if (gbuffer.length != 0U) { in log_cred()
166 gret = gss_release_buffer(&minor, &gbuffer); in log_cred()
/dports/dns/bind916/bind-9.16.27/lib/dns/
H A Dgssapictx.c100 gss_buffer_desc *gbuffer) { in name_to_gbuffer() argument
120 REGION_TO_GBUFFER(r, *gbuffer); in name_to_gbuffer()
127 gss_buffer_desc gbuffer; in log_cred() local
140 gret = gss_display_name(&minor, gname, &gbuffer, NULL); in log_cred()
158 gss_log(3, "gss cred: \"%s\", %s, %lu", (char *)gbuffer.value, in log_cred()
163 if (gbuffer.length != 0U) { in log_cred()
164 gret = gss_release_buffer(&minor, &gbuffer); in log_cred()
/dports/emulators/mess/mame-mame0226/3rdparty/bgfx/examples/31-rsm/
H A Dfs_rsm_lbuffer.sc10 SAMPLER2D(s_normal, 0); // Normal output from gbuffer
11 SAMPLER2D(s_depth, 1); // Depth output from gbuffer

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