Searched refs:geno_var (Results 1 – 4 of 4) sorted by relevance
1472 geno_var = 0.0; in BimbamKin()1489 geno_var += d * d; in BimbamKin()1637 geno_var = 0.0; in PlinkKin()1652 geno_var += 4.0; in PlinkKin()2803 geno_var = 0.0; in BimbamKinUncentered()2820 geno_var += d * d; in BimbamKinUncentered()2844 if (geno_var != 0 && in BimbamKinUncentered()2847 d = 1.0 / geno_var; in BimbamKinUncentered()3010 geno_var = 0.0; in PlinkKin()3070 if (geno_var != 0 && in PlinkKin()[all …]
2235 double d, geno_mean, geno_var; in BimbamXwz() local2259 geno_var = 0.0; in BimbamXwz()2276 geno_var += d * d; in BimbamXwz()2368 geno_var = 0.0; in PlinkXwz()2388 geno_var += 4.0; in PlinkXwz()2392 geno_var += 1.0; in PlinkXwz()2512 geno_var = 0.0; in BimbamXtXwz()2529 geno_var += d * d; in BimbamXtXwz()2618 geno_var = 0.0; in PlinkXtXwz()2638 geno_var += 4.0; in PlinkXtXwz()[all …]
2901 double geno_var; in qassoc_adapt_thread() local2966 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * nanal_m1_recip; in qassoc_adapt_thread()2991 dxx = 1.0 / geno_var; in qassoc_adapt_thread()3252 double geno_var; in qassoc_maxt_thread() local3331 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * nanal_m1_recip; in qassoc_maxt_thread()3390 dxx = 1.0 / geno_var; in qassoc_maxt_thread()8166 double geno_var; in qassoc() local8589 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * dxx; in qassoc()8593 dxx = 1.0 / geno_var; in qassoc()8617 rsq = (qt_g_covar * qt_g_covar) / (qt_var * geno_var); in qassoc()
5149 double geno_var; in qfam_regress() local5192 geno_var = (geno_ssq - geno_sum * geno_mean) * dxx; in qfam_regress()5193 if (geno_var == 0.0) { in qfam_regress()5198 dxx = 1.0 / geno_var; in qfam_regress()