| /dports/biology/avida/avida-2.12.4-src/avida-core/source/main/ |
| H A D | cPhenotype.cc | 136 genome_length = in_phen.genome_length; in operator =()
358 assert(genome_length > 0); in SetupOffspring()
571 merit = genome_length; in SetupInject()
572 copied_size = genome_length; in SetupInject()
573 executed_size = genome_length; in SetupInject()
1191 genome_length = clone_phenotype.genome_length; in SetupClone()
1200 assert(genome_length > 0); in SetupClone()
1635 assert(genome_length > 0); in CalcSizeMerit()
1648 out_size = genome_length; in CalcSizeMerit()
1651 out_size = genome_length; in CalcSizeMerit()
[all …]
|
| H A D | cPhenotype.h | 100 int genome_length; // Number of instructions in genome. variable
365 int GetGenomeLength() const { assert(initialized == true); return genome_length; } in GetGenomeLength()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/resources/org/broadinstitute/hellbender/tools/copynumber/plotting/ |
| H A D | CNVPlottingLibrary.R | 14 genome_length = contig_ends[num_contigs] functionVar
16 …plot(0, type="n", bty="n", xlim=c(0, genome_length), ylim=c(0, y.max), xlab="", ylab="", main=samp…
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/documentation/notes/ |
| H A D | mutations.cfg | 28 # 1/genome_length
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/source/actions/ |
| H A D | PrintActions.cc | 3612 int genome_length= 0; in Process() local
3617 genome_length = organism->GetGenome().GetSize(); in Process()
3619 else { genome_length = -1; } in Process()
3620 fp << genome_length << " "; in Process()
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/revert_EQU/config/ |
| H A D | avida-revertEQUtest.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect-spec-3n2r-B/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect-spec-3n4r-A/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/gradient_halo_move/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/gradient_inflow_common/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/gradient_regular_move/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/mating_types/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/merge_deme_resources/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/parasites_limited_resources/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/task-switching/config/ |
| H A D | avida.cfg | 111 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/analyze_print_withargs/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/analyze_resize_max_batches/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect-spec-3n2r-none/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect-spec-3n4r-AC/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect-spec-3n9r-AB/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect-spec-3n9r-B/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect_cap/config/ |
| H A D | avida.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/collect_unit_probabilistic/config/ |
| H A D | avida-probcollect-test.cfg | 113 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/gradient_halo_generate/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|
| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/gradient_inflow_nocommon/config/ |
| H A D | avida.cfg | 115 # 2 = When executed genome_length * AGE_LIMIT (+dev) instructions
|