/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-python/ |
H A D | tests.py | 107 self.assertEqual(WithSecondary + ".PA.166", alIt.getAlignmentId()) 178 … self.assertEqual(PrimaryOnly + ".PA.1", getAlignment(PrimaryOnly + ".PA.1").getAlignmentId()) 291 …ual(PrimaryOnly + ".PA.2", getAlignment(PrimaryOnly + ".PA.1").getMateAlignment().getAlignmentId()) 390 …rtEqual(PrimaryOnly + ".PA.1", getReference().getAlignment(PrimaryOnly + ".PA.1").getAlignmentId()) 437 self.assertEqual(WithSecondary + ".PA.33", it.getAlignmentId()) 439 self.assertEqual(WithSecondary + ".PA.34", it.getAlignmentId()) 441 self.assertEqual(WithSecondary + ".SA.169", it.getAlignmentId()) #secondary 443 self.assertEqual(WithSecondary + ".PA.35", it.getAlignmentId()) 449 self.assertEqual(WithSecondary + ".PA.33", it. getAlignmentId()) 451 self.assertEqual(WithSecondary + ".PA.34", it. getAlignmentId()) [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-python/ |
H A D | tests.py | 107 self.assertEqual(WithSecondary + ".PA.166", alIt.getAlignmentId()) 178 … self.assertEqual(PrimaryOnly + ".PA.1", getAlignment(PrimaryOnly + ".PA.1").getAlignmentId()) 291 …ual(PrimaryOnly + ".PA.2", getAlignment(PrimaryOnly + ".PA.1").getMateAlignment().getAlignmentId()) 390 …rtEqual(PrimaryOnly + ".PA.1", getReference().getAlignment(PrimaryOnly + ".PA.1").getAlignmentId()) 437 self.assertEqual(WithSecondary + ".PA.33", it.getAlignmentId()) 439 self.assertEqual(WithSecondary + ".PA.34", it.getAlignmentId()) 441 self.assertEqual(WithSecondary + ".SA.169", it.getAlignmentId()) #secondary 443 self.assertEqual(WithSecondary + ".PA.35", it.getAlignmentId()) 449 self.assertEqual(WithSecondary + ".PA.33", it. getAlignmentId()) 451 self.assertEqual(WithSecondary + ".PA.34", it. getAlignmentId()) [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-java/ |
H A D | ngs_test_CSRA1.java | 178 assertEquals ( WithSecondary + ".PA.166", alIt . getAlignmentId () ); in ReadCollection_getAlignmentRange() 305 … assertEquals( PrimaryOnly + ".PA.1", getAlignment ( PrimaryOnly + ".PA.1" ).getAlignmentId() ); in Alignment_getAlignmentId() 504 …nly + ".PA.2", getAlignment ( PrimaryOnly + ".PA.1" ) . getMateAlignment () . getAlignmentId () ); in Alignment_getMateAlignment() 675 …maryOnly + ".PA.1", getReference () . getAlignment ( PrimaryOnly + ".PA.1" ) . getAlignmentId () ); in Reference_getAlignment() 750 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice() 752 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice() 754 assertEquals ( WithSecondary + ".SA.169", it. getAlignmentId () ); //secondary in ReferenceWindow_Slice() 756 assertEquals ( WithSecondary + ".PA.35", it. getAlignmentId () ); in ReferenceWindow_Slice() 767 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category() 769 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category() [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-java/ |
H A D | ngs_test_CSRA1.java | 178 assertEquals ( WithSecondary + ".PA.166", alIt . getAlignmentId () ); in ReadCollection_getAlignmentRange() 305 … assertEquals( PrimaryOnly + ".PA.1", getAlignment ( PrimaryOnly + ".PA.1" ).getAlignmentId() ); in Alignment_getAlignmentId() 504 …nly + ".PA.2", getAlignment ( PrimaryOnly + ".PA.1" ) . getMateAlignment () . getAlignmentId () ); in Alignment_getMateAlignment() 675 …maryOnly + ".PA.1", getReference () . getAlignment ( PrimaryOnly + ".PA.1" ) . getAlignmentId () ); in Reference_getAlignment() 750 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice() 752 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice() 754 assertEquals ( WithSecondary + ".SA.169", it. getAlignmentId () ); //secondary in ReferenceWindow_Slice() 756 assertEquals ( WithSecondary + ".PA.35", it. getAlignmentId () ); in ReferenceWindow_Slice() 767 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category() 769 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category() [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/inl/ |
H A D | PileupEvent.hpp | 51 StringRef PileupEvent :: getAlignmentId () const in getAlignmentId() function in ngs::PileupEvent 53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
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H A D | Alignment.hpp | 51 StringRef Alignment :: getAlignmentId () const in getAlignmentId() function in ngs::Alignment 53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/inl/ |
H A D | PileupEvent.hpp | 51 StringRef PileupEvent :: getAlignmentId () const in getAlignmentId() function in ngs::PileupEvent 53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
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H A D | Alignment.hpp | 51 StringRef Alignment :: getAlignmentId () const in getAlignmentId() function in ngs::Alignment 53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/inl/ |
H A D | PileupEvent.hpp | 51 StringRef PileupEvent :: getAlignmentId () const in getAlignmentId() function in ngs::PileupEvent 53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
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H A D | Alignment.hpp | 51 StringRef Alignment :: getAlignmentId () const in getAlignmentId() function in ngs::Alignment 53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-java/ngs/ |
H A D | PileupEvent.java | 59 String getAlignmentId () in getAlignmentId() method
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H A D | Alignment.java | 45 String getAlignmentId () in getAlignmentId() method
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-java/ngs/ |
H A D | PileupEvent.java | 59 String getAlignmentId () in getAlignmentId() method
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H A D | Alignment.java | 45 String getAlignmentId () in getAlignmentId() method
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-java/ngs/ |
H A D | PileupEvent.java | 59 String getAlignmentId () in getAlignmentId() method
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H A D | Alignment.java | 45 String getAlignmentId () in getAlignmentId() method
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/itf/ |
H A D | PileupEventItf.hpp | 53 StringItf * getAlignmentId () const
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/itf/ |
H A D | PileupEventItf.hpp | 53 StringItf * getAlignmentId () const
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/itf/ |
H A D | PileupEventItf.hpp | 53 StringItf * getAlignmentId () const
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/test/test_engine/ |
H A D | PileupEventItf.hpp | 51 virtual ngs_adapt::StringItf * getAlignmentId () const in getAlignmentId() function in ngs_test_engine::PileupEventItf
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/test/test_engine/ |
H A D | PileupEventItf.hpp | 51 virtual ngs_adapt::StringItf * getAlignmentId () const in getAlignmentId() function in ngs_test_engine::PileupEventItf
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/test/test_engine/ |
H A D | PileupEventItf.hpp | 51 virtual ngs_adapt::StringItf * getAlignmentId () const in getAlignmentId() function in ngs_test_engine::PileupEventItf
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/ |
H A D | PileupEvent.hpp | 76 StringRef getAlignmentId () const
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/ |
H A D | PileupEvent.hpp | 76 StringRef getAlignmentId () const
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/ |
H A D | PileupEvent.hpp | 76 StringRef getAlignmentId () const
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