Home
last modified time | relevance | path

Searched refs:getAlignmentId (Results 1 – 25 of 91) sorted by relevance

1234

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-python/
H A Dtests.py107 self.assertEqual(WithSecondary + ".PA.166", alIt.getAlignmentId())
178 … self.assertEqual(PrimaryOnly + ".PA.1", getAlignment(PrimaryOnly + ".PA.1").getAlignmentId())
291 …ual(PrimaryOnly + ".PA.2", getAlignment(PrimaryOnly + ".PA.1").getMateAlignment().getAlignmentId())
390 …rtEqual(PrimaryOnly + ".PA.1", getReference().getAlignment(PrimaryOnly + ".PA.1").getAlignmentId())
437 self.assertEqual(WithSecondary + ".PA.33", it.getAlignmentId())
439 self.assertEqual(WithSecondary + ".PA.34", it.getAlignmentId())
441 self.assertEqual(WithSecondary + ".SA.169", it.getAlignmentId()) #secondary
443 self.assertEqual(WithSecondary + ".PA.35", it.getAlignmentId())
449 self.assertEqual(WithSecondary + ".PA.33", it. getAlignmentId())
451 self.assertEqual(WithSecondary + ".PA.34", it. getAlignmentId())
[all …]
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-python/
H A Dtests.py107 self.assertEqual(WithSecondary + ".PA.166", alIt.getAlignmentId())
178 … self.assertEqual(PrimaryOnly + ".PA.1", getAlignment(PrimaryOnly + ".PA.1").getAlignmentId())
291 …ual(PrimaryOnly + ".PA.2", getAlignment(PrimaryOnly + ".PA.1").getMateAlignment().getAlignmentId())
390 …rtEqual(PrimaryOnly + ".PA.1", getReference().getAlignment(PrimaryOnly + ".PA.1").getAlignmentId())
437 self.assertEqual(WithSecondary + ".PA.33", it.getAlignmentId())
439 self.assertEqual(WithSecondary + ".PA.34", it.getAlignmentId())
441 self.assertEqual(WithSecondary + ".SA.169", it.getAlignmentId()) #secondary
443 self.assertEqual(WithSecondary + ".PA.35", it.getAlignmentId())
449 self.assertEqual(WithSecondary + ".PA.33", it. getAlignmentId())
451 self.assertEqual(WithSecondary + ".PA.34", it. getAlignmentId())
[all …]
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-java/
H A Dngs_test_CSRA1.java178 assertEquals ( WithSecondary + ".PA.166", alIt . getAlignmentId () ); in ReadCollection_getAlignmentRange()
305 … assertEquals( PrimaryOnly + ".PA.1", getAlignment ( PrimaryOnly + ".PA.1" ).getAlignmentId() ); in Alignment_getAlignmentId()
504 …nly + ".PA.2", getAlignment ( PrimaryOnly + ".PA.1" ) . getMateAlignment () . getAlignmentId () ); in Alignment_getMateAlignment()
675 …maryOnly + ".PA.1", getReference () . getAlignment ( PrimaryOnly + ".PA.1" ) . getAlignmentId () ); in Reference_getAlignment()
750 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice()
752 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice()
754 assertEquals ( WithSecondary + ".SA.169", it. getAlignmentId () ); //secondary in ReferenceWindow_Slice()
756 assertEquals ( WithSecondary + ".PA.35", it. getAlignmentId () ); in ReferenceWindow_Slice()
767 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category()
769 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category()
[all …]
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-java/
H A Dngs_test_CSRA1.java178 assertEquals ( WithSecondary + ".PA.166", alIt . getAlignmentId () ); in ReadCollection_getAlignmentRange()
305 … assertEquals( PrimaryOnly + ".PA.1", getAlignment ( PrimaryOnly + ".PA.1" ).getAlignmentId() ); in Alignment_getAlignmentId()
504 …nly + ".PA.2", getAlignment ( PrimaryOnly + ".PA.1" ) . getMateAlignment () . getAlignmentId () ); in Alignment_getMateAlignment()
675 …maryOnly + ".PA.1", getReference () . getAlignment ( PrimaryOnly + ".PA.1" ) . getAlignmentId () ); in Reference_getAlignment()
750 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice()
752 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice()
754 assertEquals ( WithSecondary + ".SA.169", it. getAlignmentId () ); //secondary in ReferenceWindow_Slice()
756 assertEquals ( WithSecondary + ".PA.35", it. getAlignmentId () ); in ReferenceWindow_Slice()
767 assertEquals ( WithSecondary + ".PA.33", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category()
769 assertEquals ( WithSecondary + ".PA.34", it. getAlignmentId () ); in ReferenceWindow_Slice_Filtered_Category()
[all …]
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/inl/
H A DPileupEvent.hpp51 StringRef PileupEvent :: getAlignmentId () const in getAlignmentId() function in ngs::PileupEvent
53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
H A DAlignment.hpp51 StringRef Alignment :: getAlignmentId () const in getAlignmentId() function in ngs::Alignment
53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/inl/
H A DPileupEvent.hpp51 StringRef PileupEvent :: getAlignmentId () const in getAlignmentId() function in ngs::PileupEvent
53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
H A DAlignment.hpp51 StringRef Alignment :: getAlignmentId () const in getAlignmentId() function in ngs::Alignment
53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/inl/
H A DPileupEvent.hpp51 StringRef PileupEvent :: getAlignmentId () const in getAlignmentId() function in ngs::PileupEvent
53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
H A DAlignment.hpp51 StringRef Alignment :: getAlignmentId () const in getAlignmentId() function in ngs::Alignment
53 { return StringRef ( self -> getAlignmentId () ); } in getAlignmentId()
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-java/ngs/
H A DPileupEvent.java59 String getAlignmentId () in getAlignmentId() method
H A DAlignment.java45 String getAlignmentId () in getAlignmentId() method
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-java/ngs/
H A DPileupEvent.java59 String getAlignmentId () in getAlignmentId() method
H A DAlignment.java45 String getAlignmentId () in getAlignmentId() method
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-java/ngs/
H A DPileupEvent.java59 String getAlignmentId () in getAlignmentId() method
H A DAlignment.java45 String getAlignmentId () in getAlignmentId() method
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/itf/
H A DPileupEventItf.hpp53 StringItf * getAlignmentId () const
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/itf/
H A DPileupEventItf.hpp53 StringItf * getAlignmentId () const
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/itf/
H A DPileupEventItf.hpp53 StringItf * getAlignmentId () const
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/test/test_engine/
H A DPileupEventItf.hpp51 virtual ngs_adapt::StringItf * getAlignmentId () const in getAlignmentId() function in ngs_test_engine::PileupEventItf
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/test/test_engine/
H A DPileupEventItf.hpp51 virtual ngs_adapt::StringItf * getAlignmentId () const in getAlignmentId() function in ngs_test_engine::PileupEventItf
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/test/test_engine/
H A DPileupEventItf.hpp51 virtual ngs_adapt::StringItf * getAlignmentId () const in getAlignmentId() function in ngs_test_engine::PileupEventItf
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/
H A DPileupEvent.hpp76 StringRef getAlignmentId () const
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/
H A DPileupEvent.hpp76 StringRef getAlignmentId () const
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/
H A DPileupEvent.hpp76 StringRef getAlignmentId () const

1234