Searched refs:getBasesForPath (Results 1 – 3 of 3) sorted by relevance
680 final byte[] refBases = getBasesForPath(refPath, false); in generateCigarAgainstDownwardsReferencePath()681 final byte[] altBases = getBasesForPath(altPath, false); in generateCigarAgainstDownwardsReferencePath()712 final byte[] refBases = getBasesForPath(refPath, true); in generateCigarAgainstUpwardsReferencePath()713 final byte[] altBases = getBasesForPath(altPath, true); in generateCigarAgainstUpwardsReferencePath()845 byte[] getBasesForPath(final List<MultiDeBruijnVertex> path, final boolean expandSource) { in getBasesForPath() method in AbstractReadThreadingGraph
469 final String resultForTails = new String(graph.getBasesForPath(vertexes, false)); in testGetBasesForPath()471 final String resultForHeads = new String(graph.getBasesForPath(vertexes, true)); in testGetBasesForPath()
986 final String resultForTails = new String(graph.getBasesForPath(vertexes, false)); in testGetBasesForPath()988 final String resultForHeads = new String(graph.getBasesForPath(vertexes, true)); in testGetBasesForPath()