Searched refs:getKeyScoreArray (Results 1 – 7 of 7) sorted by relevance
/dports/biology/bbmap/bbmap/current/align2/ |
H A D | AbstractIndex.java | 81 abstract int[] getKeyScoreArray(int len, int strand); in getKeyScoreArray() method in AbstractIndex
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H A D | BBIndexPacBioSkimmer.java | 607 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1)); 2058 final int[] getKeyScoreArray(int len, int strand){
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H A D | BBIndex5.java | 513 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1)); 2419 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method
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H A D | BBIndexPacBio.java | 514 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1)); 2391 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method in BBIndexPacBio
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H A D | BBIndexAcc.java | 610 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1)); 2589 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method
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H A D | BBIndex.java | 537 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1)); 3113 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method
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H A D | AbstractMapThread.java | 732 final int[] keyScoresP=index.getKeyScoreArray(offsets.length, 0); in quickMap()
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