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Searched refs:getKeyScoreArray (Results 1 – 7 of 7) sorted by relevance

/dports/biology/bbmap/bbmap/current/align2/
H A DAbstractIndex.java81 abstract int[] getKeyScoreArray(int len, int strand); in getKeyScoreArray() method in AbstractIndex
H A DBBIndexPacBioSkimmer.java607 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1));
2058 final int[] getKeyScoreArray(int len, int strand){
H A DBBIndex5.java513 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1));
2419 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method
H A DBBIndexPacBio.java514 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1));
2391 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method in BBIndexPacBio
H A DBBIndexAcc.java610 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1));
2589 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method
H A DBBIndex.java537 final int[] keyScoresM=Tools.reverseAndCopy(keyScoresP, getKeyScoreArray(keyScoresP.length, 1));
3113 final int[] getKeyScoreArray(int len, int strand){ in getKeyScoreArray() method
H A DAbstractMapThread.java732 final int[] keyScoresP=index.getKeyScoreArray(offsets.length, 0); in quickMap()