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Searched refs:getLogAlpha (Results 1 – 3 of 3) sorted by relevance

/dports/biology/haplohseq/haplohseq-0.1.2/src/hmm/
H A DHmm.cpp166 double logProb = trans->from->getLogAlpha() + in forward()
184 double scaledLogAlpha = (*it)->getLogAlpha() + log(ts->getScaleFactor()); in forward()
267 double logPosterior = (*it)->getLogAlpha() + in forwardBackward()
277 double logPosterior = (*it)->getLogAlpha() + (*it)->getLogBeta(); in forwardBackward()
285 double posterior = exp((*it)->getLogAlpha() + in forwardBackward()
312 double logProb = trans->from->getLogAlpha()+getTransProb(trans)+getEmitProb(trans); in viterbi()
328 if (best==0 || best->getLogAlpha()<node->getLogAlpha()) in viterbi()
350 return best->getLogAlpha(); in viterbi()
417 denom += exp(node_i->getLogAlpha() + in estimateProbs()
431 double diGamma = exp(node_i->getLogAlpha() + in estimateProbs()
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H A DHmm.h58 double getLogAlpha() const { return this->logAlpha; } in getLogAlpha() function
/dports/biology/haplohseq/haplohseq-0.1.2/src/test/
H A DHmmTest.cpp255 double alpha = exp(ps->getLogAlpha()); in BOOST_AUTO_TEST_CASE()