| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/copynumber/utils/ |
| H A D | TagGermlineEventsIntegrationTest.java | 48 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testBasic()
49 …ue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.DELETION.getOutputString()); in testBasic()
50 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testBasic()
51 …ue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.DELETION.getOutputString()); in testBasic()
76 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testSlightlyDifferent()
77 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testSlightlyDifferent()
78 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testSlightlyDifferent()
79 …ue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.DELETION.getOutputString()); in testSlightlyDifferent()
104 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testSlightlyDifferentAndSplit()
105 …lue(TagGermlineEvents.GERMLINE_TAG_HEADER), CalledCopyRatioSegment.Call.NEUTRAL.getOutputString()); in testSlightlyDifferentAndSplit()
[all …]
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 66 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
67 getOutputString(command) + "missing in output"); in check()
70 "Error message missing for: " + getOutputString( in check()
76 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
79 "Error message missing for: " + getOutputString( in check()
85 private String getOutputString(CompileCommand command) { in getOutputString() method in CommandProcessor
|
| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/hotspot/jtreg/compiler/compilercontrol/share/processors/ |
| H A D | CommandProcessor.java | 74 Asserts.assertTrue(input.contains(getOutputString(command)), in check()
75 getOutputString(command) + " missing in output"); in check()
78 "Error message missing for: " + getOutputString( in check()
84 Asserts.assertFalse(input.contains(getOutputString(command))); in check()
87 "Error message missing for: " + getOutputString( in check()
96 private String getOutputString(CompileCommand cc) { in getOutputString() method in CommandProcessor
|
| /dports/devel/py-opengrok-tools/opengrok-1.3.16/opengrok-indexer/src/main/java/org/opengrok/indexer/util/ |
| H A D | CtagsUtil.java | 46 String output = executor.getOutputString(); in validate()
71 String output = executor.getOutputString(); in getLanguages()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/formats/collections/ |
| H A D | CalledCopyRatioSegmentCollection.java | 44 .filter(c -> c.getOutputString().equals(callOutputString)).findFirst().orElse(null);
58 .append(calledCopyRatioSegment.getCall().getOutputString());
|
| H A D | CalledLegacySegmentCollection.java | 66 .filter(c -> c.getOutputString().equals(callOutputString)).findFirst().orElseThrow(
81 .append(calledLegacySegment.getCall().getOutputString())
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/funcotator/ |
| H A D | AnnotatedIntervalToSegmentVariantContextConverter.java | 77 ….filter(c -> c.getOutputString().equals(segment.getAnnotationValue(callAnnotationName))).findFirst… in retrieveCall()
97 …throw new GATKException.ShouldNeverReachHereException(call.getOutputString() + " is not represente… in convertActualSegCallToAllele()
|
| /dports/devel/py-opengrok-tools/opengrok-1.3.16/opengrok-indexer/src/main/java/org/opengrok/indexer/history/ |
| H A D | PerforceRepository.java | 172 status = (executor.getOutputString().contains("//")); in isInP4Depot()
190 status = (executor.getOutputString().contains("//")); in isInP4Depot()
296 return executor.getOutputString().trim(); in determineCurrentVersion()
|
| H A D | BitKeeperRepository.java | 111 final Matcher matcher = VERSION_PATTERN.matcher(exec.getOutputString()); in ensureVersion()
193 final String parent = executor.getOutputString().trim(); in determineParent()
247 return executor.getOutputString().trim().equals(basename); in fileHasHistory()
|
| H A D | MercurialRepository.java | 133 return executor.getOutputString().trim(); in determineBranch()
571 return executor.getOutputString().trim(); in determineParent()
595 return executor.getOutputString().trim(); in determineCurrentVersion()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/utils/germlinetagging/ |
| H A D | SimpleGermlineTagger.java | 77 …s.getAnnotationValue(callAnnotation).equals(CalledCopyRatioSegment.Call.NEUTRAL.getOutputString())) in tagTumorSegmentsWithGermlineActivity()
84 …me, tumorSegsToGermlineTag.getOrDefault(s, CalledCopyRatioSegment.Call.NEUTRAL).getOutputString())) in tagTumorSegmentsWithGermlineActivity()
104 ….filter(c -> c.getOutputString().equals(normalSeg.getAnnotationValue(callAnnotation))).findFirst()… in createTumorSegmentsToGermlineTagMap()
|
| /dports/astro/gpsbabel14/gpsbabel-1.4.4/gui/ |
| H A D | processwait.h | 52 QString getOutputString() const {return outputString;}; in getOutputString() function
|
| /dports/astro/gpsbabel/gpsbabel-gpsbabel_1_7_0/gui/ |
| H A D | processwait.h | 52 QString getOutputString() const in getOutputString() function
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/formats/records/ |
| H A D | CalledCopyRatioSegment.java | 17 public String getOutputString() { in getOutputString() method in CalledCopyRatioSegment.Call
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/copynumber/ |
| H A D | CallCopyRatioSegmentsIntegrationTest.java | 32 …s(calledCopyRatioSegments.getRecords().stream().map(s -> s.getCall().getOutputString()).toArray(),… in testCallSegments()
|
| /dports/devel/py-opengrok-tools/opengrok-1.3.16/opengrok-indexer/src/test/java/org/opengrok/indexer/util/ |
| H A D | ExecutorTest.java | 52 … assertTrue(instance.getOutputString().startsWith("testing org.opengrok.indexer.util.Executor")); in testString()
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/jdk.scripting.nashorn/share/classes/jdk/nashorn/internal/runtime/ |
| H A D | ScriptingFunctions.java | 207 final String outString = executor.getOutputString(); in exec()
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/jdk.scripting.nashorn/share/classes/jdk/nashorn/internal/runtime/ |
| H A D | ScriptingFunctions.java | 207 final String outString = executor.getOutputString(); in exec()
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/jdk.scripting.nashorn/share/classes/jdk/nashorn/internal/runtime/ |
| H A D | ScriptingFunctions.java | 207 final String outString = executor.getOutputString(); in exec()
|