Searched refs:getSeqEnd (Results 1 – 5 of 5) sorted by relevance
77 public int getSeqEnd() in getSeqEnd() method in MappingOutputPojo
1114 int sEnd = mp.getSeqEnd(); in getMappingOutput()
62 bases = Arrays.copyOfRange(bases, alignment.getSeqStart(), alignment.getSeqEnd()); in applyAlignment()64 … quals = Arrays.copyOfRange(quals, alignment.getSeqStart(), alignment.getSeqEnd()); in applyAlignment()
299 this.endInAssembledContig = alignment.getSeqEnd(); in AlignmentInterval()301 this.startInAssembledContig = unclippedContigLength - alignment.getSeqEnd() + 1; in AlignmentInterval()
172 output.writeInt(alignment.getSeqEnd()); in writeAlignment()