| /dports/games/glest/glest_source_3.2.2/source/shared_lib/sources/xml/ |
| H A D | xml_parser.cpp | 256 …de doesn't have "+intToStr(i+1)+" children named \"" + childName + "\"\n\nTree: "+getTreeString()); in getChild()
269 …)+"\" doesn't have "+intToStr(i+1)+" children named \""+childName+"\"\n\nTree: "+getTreeString()); in getChild()
307 string XmlNode::getTreeString() const{ in getTreeString() function in Shared::Xml::XmlNode
315 str+= children[i]->getTreeString(); in getTreeString()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | iqtree.cpp | 578 initTree = getTreeString(); in computeInitialTree()
630 initTree = getTreeString(); in computeInitialTree()
1596 pllReadNewick(getTreeString()); in perturbStableSplits()
1600 return getTreeString(); in perturbStableSplits()
1655 pllReadNewick(getTreeString()); in doRandomNNIs()
1660 return getTreeString(); in doRandomNNIs()
2091 newTree = getTreeString(); in optimizeModelParameters()
2144 tree = getTreeString(); in optimizeBranches()
2268 curTree = getTreeString(); in doTreeSearch()
4100 tree = getTreeString(); in syncCurrentTree()
[all …]
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| H A D | phylosupertreeunlinked.h | 87 virtual string getTreeString();
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| H A D | phylosupertreeplen.h | 80 virtual string getTreeString();
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| H A D | phylosupertreeunlinked.cpp | 91 string PhyloSuperTreeUnlinked::getTreeString() { in getTreeString() function in PhyloSuperTreeUnlinked
274 bestTree = getTreeString(); in doTreeSearch()
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| H A D | phylosupertree.h | 148 virtual string getTreeString();
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| H A D | candidateset.cpp | 514 update(treeObject.getTreeString(), score); in recomputeLoglOfAllTrees()
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| H A D | phylotree.cpp | 157 string newick = PhyloTree::getTreeString(); in saveCheckpoint()
460 pllReadNewick(getTreeString()); in readTreeString()
490 pllReadNewick(getTreeString()); in readTreeStringSeqName()
506 pllReadNewick(getTreeString()); in wrapperFixNegativeBranch()
544 string PhyloTree::getTreeString() { in getTreeString() function in PhyloTree
2825 pllReadNewick(getTreeString()); in moveRoot()
2846 string best_tree = getTreeString(); in optimizeRootPosition()
2864 trees.push_back(getTreeString()); in optimizeRootPosition()
2880 best_tree = getTreeString(); in optimizeRootPosition()
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| H A D | phylosupertree.cpp | 251 string PhyloSuperTree::getTreeString() { in getTreeString() function in PhyloSuperTree
281 pllReadNewick(getTreeString()); in readTreeString()
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| H A D | phylosupertreeplen.cpp | 1865 string PhyloSuperTreePlen::getTreeString() { in getTreeString() function in PhyloSuperTreePlen
1866 return PhyloTree::getTreeString(); in getTreeString()
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| H A D | phylotree.h | 1177 virtual string getTreeString();
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| /dports/games/megaglest/megaglest-source-3.13.0/source/shared_lib/sources/xml/ |
| H A D | xml_parser.cpp | 811 …t have " + uIntToStr(i+1) +" children named \"" + childName + "\"\n\nTree: "+getTreeString(),true); in getChild()
824 …n't have " + uIntToStr(i+1) + " children named \""+childName+"\"\n\nTree: "+getTreeString(),true); in getChild()
843 …e "+intToStr(childIndex+1)+" children named \"" + childName + "\"\n\nTree: "+getTreeString(),true); in getChildWithAliases()
857 …med \""+ (childNameList.empty() ? "???" : childNameList[0]) +"\"\n\nTree: "+getTreeString(),true); in getChildWithAliases()
951 string XmlNode::getTreeString() const { in getTreeString() function in Shared::Xml::XmlNode
959 str+= children[i]->getTreeString(); in getTreeString()
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| /dports/games/glest/glest_source_3.2.2/source/shared_lib/include/xml/ |
| H A D | xml_parser.h | 121 string getTreeString() const;
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| /dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
| H A D | modelfactorymixlen.cpp | 149 return tree->getTreeString(); in sortClassesByTreeLength()
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| /dports/games/megaglest/megaglest-source-3.13.0/source/shared_lib/include/xml/ |
| H A D | xml_parser.h | 175 string getTreeString() const;
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| /dports/biology/iqtree/IQ-TREE-2.0.6/main/ |
| H A D | phyloanalysis.cpp | 2158 string contree = tree->getTreeString(); in optimizeConTree()
2353 initTree = iqtree->getTreeString(); in runTreeReconstruction()
2400 iqtree->intermediateTrees.update(iqtree->getTreeString(), iqtree->getCurScore()); in runTreeReconstruction()
2404 ((IQTree*)(*it))->addTreeToCandidateSet((*it)->getTreeString(), in runTreeReconstruction()
2640 string current_tree = iqtree->getTreeString(); in runTreeReconstruction()
2785 string current_tree = iqtree->getTreeString(); in runMultipleTreeReconstruction()
2854 string current_tree = tree->getTreeString(); in runMultipleTreeReconstruction()
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| H A D | phylotesting.cpp | 607 initTree = iqtree->getTreeString(); in computeFastMLTree()
621 initTree = iqtree->getTreeString(); in computeFastMLTree()
1580 string initTree = iqtree->getTreeString(); in evaluate()
1596 tree = iqtree->getTreeString(); in evaluate()
1648 string tree_string = iqtree->getTreeString(); in evaluate()
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