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Searched refs:gi_list_total (Results 1 – 13 of 13) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dblast.h514 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total));
518 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, QueriesPtr mu…
645 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total));
649 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total));
651 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, int (LIBCALLB…
653 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, int (LIBCALLB…
674 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total));
676 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total));
707 Int4 gi_list_total, Int4 hitlist_size));
710 Int4 gi_list_total));
H A Dmblast.h230 Int4 gi_list_total,
238 Int4 gi_list_total,
251 SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total,
H A Dblastpri.h758 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr…
760 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr…
771 gi_list, Int4 gi_list_total, ReadDBFILEPtr
896 …nt4Ptr gi_list, OIDListPtr oidlist, BlastDoubleInt4Ptr PNTR gi_list_pointers, Int4 gi_list_total));
H A Dblastutl.c4944 …me, database, options, other_returns, error_returns, callback, seqid_list, gi_list, gi_list_total); in BioseqBlastEngineEx()
5240 …me, database, options, other_returns, error_returns, callback, seqid_list, gi_list, gi_list_total); in BioseqHitRangeEngine()
11031 Int4 gi_list_total, Int4 hitlist_size) in BlastPruneSeqAlignByGiList() argument
11042 if (!gi_list || gi_list_total <= 0) in BlastPruneSeqAlignByGiList()
11048 if (hitlist_size >= gi_list_total) { in BlastPruneSeqAlignByGiList()
11049 qsort((void*)gi_list, gi_list_total, sizeof(Int4), Int4Compare); in BlastPruneSeqAlignByGiList()
11051 gi_list_total); in BlastPruneSeqAlignByGiList()
11083 for (index = 0; index < gi_list_total; ++index) { in BlastPruneSeqAlignByGiList()
11141 Int4 gi_list_total) in BlastPruneSeqAlignBySortedGiList() argument
11149 if (!gi_list || gi_list_total <= 0) in BlastPruneSeqAlignBySortedGiList()
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H A Dmblast.c771 Int4 gi_list_total, in BioseqMegaBlastEngine() argument
802 seqid_list, gi_list, gi_list_total, in BioseqMegaBlastEngine()
827 Int4 gi_list_total, in BioseqMegaBlastEngineByLoc() argument
873 gi_list_total, NULL); in BioseqMegaBlastEngineByLoc()
1000 gi_list_total, ReadDBFILEPtr rdfp) in MegaBlastSetUpSearchWithReadDbInternal() argument
1061 looking_for_gis = BlastProcessGiLists(search, options, gi_list, gi_list_total); in MegaBlastSetUpSearchWithReadDbInternal()
H A Dblast.c5658 gi_list, Int4 gi_list_total, ReadDBFILEPtr in BLASTSetUpSearchWithReadDbInternalEx() argument
5666 gi_list_total, rdfp); in BLASTSetUpSearchWithReadDbInternalEx()
5672 gi_list_total, rdfp); in BLASTSetUpSearchWithReadDbInternalEx()
5677 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr… in BLASTSetUpSearchWithReadDbInternal() argument
5679 …y_bsp, prog_name, qlen, dbname, options, callback, seqid_list, gi_list, gi_list_total, rdfp, NULL); in BLASTSetUpSearchWithReadDbInternal()
5714 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr… in BLASTSetUpSearchWithReadDbInternalMult() argument
5773 looking_for_gis = BlastProcessGiLists(search, options, gi_list, gi_list_total); in BLASTSetUpSearchWithReadDbInternalMult()
5847 …((Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total) in BLASTSetUpSearchWithReadDbEx() argument
5850 …, query_bsp, prog_name, qlen, dbname, options, callback, seqid_list, gi_list, gi_list_total, NULL); in BLASTSetUpSearchWithReadDbEx()
5868 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, QueriesPtr mu… in BLASTSetUpSearchByLocWithReadDbEx() argument
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H A Dblastool.c2072 …eInt4Ptr gi_list, OIDListPtr oidlist, BlastDoubleInt4Ptr PNTR gi_list_pointers, Int4 gi_list_total) in BlastAdjustDbNumbers() argument
/dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/
H A Dwwwblast.c857 theInfo->gi_list_total > 0) { in WWWBlastDoSearch()
862 theInfo->gi_list_total); in WWWBlastDoSearch()
894 …options, &other_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total); in WWWBlastDoSearch()
896 …options, &other_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total); in WWWBlastDoSearch()
900 …r_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total, AppendMegaBla… in WWWBlastDoSearch()
902 …s, &other_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total, NULL); in WWWBlastDoSearch()
H A Dwwwblast.h185 Int4 gi_list_total; member
H A Dwwwbutl.c1388 theInfo->gi_list_total = in WWWCreateSearchOptions()
1391 if(theInfo->gi_list_total > 0) { in WWWCreateSearchOptions()
1393 theInfo->gi_list = MemNew(theInfo->gi_list_total*sizeof(BlastDoubleInt4)); in WWWCreateSearchOptions()
1394 for(i = 0; i < theInfo->gi_list_total; i++) in WWWCreateSearchOptions()
/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/
H A Dcddposutil.h105 Int4 gi_list_total,
H A Dcddposutil.c1991 Int4 gi_list_total, in CddSetUpSearchWithReadDb() argument
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dformatdb.c709 Int4 i, gi_list_total, ordinal_id, rdfp_ctr = 0; in Main() local
727 gi_list = GetGisFromFile(gifile, &gi_list_total); in Main()
739 for (i = 0; i < gi_list_total; i++) { in Main()