/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | blast.h | 514 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total)); 518 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, QueriesPtr mu… 645 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total)); 649 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total)); 651 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, int (LIBCALLB… 653 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, int (LIBCALLB… 674 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total)); 676 …Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total)); 707 Int4 gi_list_total, Int4 hitlist_size)); 710 Int4 gi_list_total));
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H A D | mblast.h | 230 Int4 gi_list_total, 238 Int4 gi_list_total, 251 SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total,
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H A D | blastpri.h | 758 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr… 760 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr… 771 gi_list, Int4 gi_list_total, ReadDBFILEPtr 896 …nt4Ptr gi_list, OIDListPtr oidlist, BlastDoubleInt4Ptr PNTR gi_list_pointers, Int4 gi_list_total));
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H A D | blastutl.c | 4944 …me, database, options, other_returns, error_returns, callback, seqid_list, gi_list, gi_list_total); in BioseqBlastEngineEx() 5240 …me, database, options, other_returns, error_returns, callback, seqid_list, gi_list, gi_list_total); in BioseqHitRangeEngine() 11031 Int4 gi_list_total, Int4 hitlist_size) in BlastPruneSeqAlignByGiList() argument 11042 if (!gi_list || gi_list_total <= 0) in BlastPruneSeqAlignByGiList() 11048 if (hitlist_size >= gi_list_total) { in BlastPruneSeqAlignByGiList() 11049 qsort((void*)gi_list, gi_list_total, sizeof(Int4), Int4Compare); in BlastPruneSeqAlignByGiList() 11051 gi_list_total); in BlastPruneSeqAlignByGiList() 11083 for (index = 0; index < gi_list_total; ++index) { in BlastPruneSeqAlignByGiList() 11141 Int4 gi_list_total) in BlastPruneSeqAlignBySortedGiList() argument 11149 if (!gi_list || gi_list_total <= 0) in BlastPruneSeqAlignBySortedGiList() [all …]
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H A D | mblast.c | 771 Int4 gi_list_total, in BioseqMegaBlastEngine() argument 802 seqid_list, gi_list, gi_list_total, in BioseqMegaBlastEngine() 827 Int4 gi_list_total, in BioseqMegaBlastEngineByLoc() argument 873 gi_list_total, NULL); in BioseqMegaBlastEngineByLoc() 1000 gi_list_total, ReadDBFILEPtr rdfp) in MegaBlastSetUpSearchWithReadDbInternal() argument 1061 looking_for_gis = BlastProcessGiLists(search, options, gi_list, gi_list_total); in MegaBlastSetUpSearchWithReadDbInternal()
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H A D | blast.c | 5658 gi_list, Int4 gi_list_total, ReadDBFILEPtr in BLASTSetUpSearchWithReadDbInternalEx() argument 5666 gi_list_total, rdfp); in BLASTSetUpSearchWithReadDbInternalEx() 5672 gi_list_total, rdfp); in BLASTSetUpSearchWithReadDbInternalEx() 5677 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr… in BLASTSetUpSearchWithReadDbInternal() argument 5679 …y_bsp, prog_name, qlen, dbname, options, callback, seqid_list, gi_list, gi_list_total, rdfp, NULL); in BLASTSetUpSearchWithReadDbInternal() 5714 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, ReadDBFILEPtr… in BLASTSetUpSearchWithReadDbInternalMult() argument 5773 looking_for_gis = BlastProcessGiLists(search, options, gi_list, gi_list_total); in BLASTSetUpSearchWithReadDbInternalMult() 5847 …((Int4 done, Int4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total) in BLASTSetUpSearchWithReadDbEx() argument 5850 …, query_bsp, prog_name, qlen, dbname, options, callback, seqid_list, gi_list, gi_list_total, NULL); in BLASTSetUpSearchWithReadDbEx() 5868 …t4 positives)), SeqIdPtr seqid_list, BlastDoubleInt4Ptr gi_list, Int4 gi_list_total, QueriesPtr mu… in BLASTSetUpSearchByLocWithReadDbEx() argument [all …]
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H A D | blastool.c | 2072 …eInt4Ptr gi_list, OIDListPtr oidlist, BlastDoubleInt4Ptr PNTR gi_list_pointers, Int4 gi_list_total) in BlastAdjustDbNumbers() argument
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/dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/ |
H A D | wwwblast.c | 857 theInfo->gi_list_total > 0) { in WWWBlastDoSearch() 862 theInfo->gi_list_total); in WWWBlastDoSearch() 894 …options, &other_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total); in WWWBlastDoSearch() 896 …options, &other_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total); in WWWBlastDoSearch() 900 …r_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total, AppendMegaBla… in WWWBlastDoSearch() 902 …s, &other_returns, &error_returns, callback, NULL, theInfo->gi_list, theInfo->gi_list_total, NULL); in WWWBlastDoSearch()
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H A D | wwwblast.h | 185 Int4 gi_list_total; member
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H A D | wwwbutl.c | 1388 theInfo->gi_list_total = in WWWCreateSearchOptions() 1391 if(theInfo->gi_list_total > 0) { in WWWCreateSearchOptions() 1393 theInfo->gi_list = MemNew(theInfo->gi_list_total*sizeof(BlastDoubleInt4)); in WWWCreateSearchOptions() 1394 for(i = 0; i < theInfo->gi_list_total; i++) in WWWCreateSearchOptions()
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/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/ |
H A D | cddposutil.h | 105 Int4 gi_list_total,
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H A D | cddposutil.c | 1991 Int4 gi_list_total, in CddSetUpSearchWithReadDb() argument
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/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | formatdb.c | 709 Int4 i, gi_list_total, ordinal_id, rdfp_ctr = 0; in Main() local 727 gi_list = GetGisFromFile(gifile, &gi_list_total); in Main() 739 for (i = 0; i < gi_list_total; i++) { in Main()
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