| /dports/biology/stringtie/stringtie-2.1.1/ |
| H A D | stringtie.cpp | 354 GRefData& grefdata = refguides[m->gseq_id]; in main() local
355 grefdata.add(&gffr, m); //transcripts already sorted by location in main()
365 GRefData& grefdata = refguides[r]; in main() local
366 for (int k=0;k<grefdata.rnas.Count();++k) { in main()
367 …GMessage("#transcript #%d : %s (%d exons)\n", k, grefdata.rnas[k]->getID(), grefdata.rnas[k]->exon… in main()
368 grefdata.rnas[k]->printGff(stderr); in main()
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| /dports/devel/upp/upp/bazaar/plugin/sundials/src/ida/ |
| H A D | ida_bbdpre.c | 565 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
584 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
660 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/science/cantera/cantera-2.5.1-611-gc4d6ecc15/ext/sundials/src/ida/ |
| H A D | ida_bbdpre.c | 565 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
584 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
660 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/math/sundials/sundials-5.7.0/src/ida/ |
| H A D | ida_bbdpre.c | 565 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
584 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
660 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/math/casadi/casadi-3.5.5/external_packages/casadi-sundials/idas/ |
| H A D | idas_bbdpre.c | 500 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
521 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
597 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/science/simbody/simbody-Simbody-3.7/SimTKmath/Integrators/src/CPodes/sundials/src/cpodes/ |
| H A D | cpodes_bbdpre.c | 820 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in cpBBDDQJacImpl() local
837 grefdata = N_VGetArrayPointer(gref); in cpBBDDQJacImpl()
897 BAND_COL_ELEM(col_j,i,j) = inc_inv * (gtempdata[i] - grefdata[i]); in cpBBDDQJacImpl()
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| /dports/math/stanmath/math-4.2.0/lib/sundials_5.7.0/src/idas/ |
| H A D | idas_bbdpre.c | 581 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
600 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
676 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/science/cantera/cantera-2.5.1-611-gc4d6ecc15/ext/sundials/src/idas/ |
| H A D | idas_bbdpre.c | 581 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
600 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
676 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/math/sundials/sundials-5.7.0/src/idas/ |
| H A D | idas_bbdpre.c | 581 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
600 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
676 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
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| /dports/math/py-pystan/pystan-2.19.0.0/pystan/stan/lib/stan_math/lib/sundials_4.1.0/src/idas/ |
| H A D | idas_bbdpre.c | 582 realtype *ydata, *ypdata, *ytempdata, *yptempdata, *grefdata, *gtempdata; in IBBDDQJac() local
601 grefdata = N_VGetArrayPointer(gref); in IBBDDQJac()
677 inc_inv * (gtempdata[i] - grefdata[i]); in IBBDDQJac()
|