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Searched refs:grm_files (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Dmlm_assoc.cpp32 vector<string> grm_files; in mlma() local
45 grm_files.push_back(grm_file); in mlma()
46 grm_files.push_back(subtract_grm_file); in mlma()
47 for (i = 0; i < grm_files.size(); i++) { in mlma()
54 grm_files.push_back(grm_file); in mlma()
60 for (i = 0; i < grm_files.size(); i++) { in mlma()
66 grm_files.push_back("NA"); in mlma()
119 cout<<"\nSubtracting [" << grm_files[1] << "] from [" << grm_files[0] << "] ..." << endl; in mlma()
145 for (i = 0; i < grm_files.size(); i++) { in mlma()
177 for (i = 0; i < grm_files.size(); i++) { in mlma()
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H A Dbivar_reml.cpp31 vector<string> phen_ID, qcovar_ID, covar_ID, grm_id, grm_files; in fit_bivar_reml() local
37 grm_files.push_back(grm_file); in fit_bivar_reml()
40 read_grm_filenames(grm_file, grm_files, false); in fit_bivar_reml()
41 for (i = 0; i < grm_files.size(); i++) { in fit_bivar_reml()
42 read_grm(grm_files[i], grm_id, false, true, !(adj_grm_fac > -1.0)); in fit_bivar_reml()
183 string prev_file = grm_files[0]; in fit_bivar_reml()
187 for (k = 0; k < grm_files.size(); k++) { in fit_bivar_reml()
189 read_grm(grm_files[k], grm_id, true, false, !(adj_grm_fac > -1.0)); in fit_bivar_reml()
221 prev_file = grm_files[k]; in fit_bivar_reml()
272 for (i = 0; i < grm_files.size(); i++) { in fit_bivar_reml()
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H A Dgrm.cpp516 vector<string> grm_files, grm_id; in merge_grm() local
517 read_grm_filenames(merge_grm_file, grm_files); in merge_grm()
520 for (f = 0; f < grm_files.size(); f++) { in merge_grm()
521 read_grm(grm_files[f], grm_id, false, true); in merge_grm()
533 for (f = 0; f < grm_files.size(); f++) { in merge_grm()
535 read_grm(grm_files[f], grm_id); in merge_grm()
558 cout << "\n" << grm_files.size() << " GRMs have been merged together." << endl; in merge_grm()
561 void gcta::read_grm_filenames(string merge_grm_file, vector<string> &grm_files, bool out_log) { in read_grm_filenames() argument
565 grm_files.clear(); in read_grm_filenames()
569 if (StrFunc::split_string(str_buf, vs_buf) == 1) grm_files.push_back(vs_buf[0]); in read_grm_filenames()
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H A Dest_hsq.cpp193 grm_files.push_back(grm_file); in fit_reml()
196 read_grm_filenames(grm_file, grm_files, false); in fit_reml()
197 for (i = 0; i < grm_files.size(); i++) { in fit_reml()
297 string prev_file = grm_files[0]; in fit_reml()
329 prev_file = grm_files[i]; in fit_reml()
382 for (i = 0; i < grm_files.size(); i++) { in fit_reml()
384 if (grm_files.size() == 1) strstrm << ""; in fit_reml()
390 for (i = 0; i < grm_files.size(); i++) { in fit_reml()
392 if (grm_files.size() == 1) strstrm1 << ""; in fit_reml()
401 for (i = 0; i < grm_files.size(); i++) { in fit_reml()
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H A Dgcta.h223 void read_grm_filenames(string merge_grm_file, vector<string> &grm_files, bool out_log = true);