Searched refs:grm_files (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gcta/gcta_1.26.0_src/ |
H A D | mlm_assoc.cpp | 32 vector<string> grm_files; in mlma() local 45 grm_files.push_back(grm_file); in mlma() 46 grm_files.push_back(subtract_grm_file); in mlma() 47 for (i = 0; i < grm_files.size(); i++) { in mlma() 54 grm_files.push_back(grm_file); in mlma() 60 for (i = 0; i < grm_files.size(); i++) { in mlma() 66 grm_files.push_back("NA"); in mlma() 119 cout<<"\nSubtracting [" << grm_files[1] << "] from [" << grm_files[0] << "] ..." << endl; in mlma() 145 for (i = 0; i < grm_files.size(); i++) { in mlma() 177 for (i = 0; i < grm_files.size(); i++) { in mlma() [all …]
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H A D | bivar_reml.cpp | 31 vector<string> phen_ID, qcovar_ID, covar_ID, grm_id, grm_files; in fit_bivar_reml() local 37 grm_files.push_back(grm_file); in fit_bivar_reml() 40 read_grm_filenames(grm_file, grm_files, false); in fit_bivar_reml() 41 for (i = 0; i < grm_files.size(); i++) { in fit_bivar_reml() 42 read_grm(grm_files[i], grm_id, false, true, !(adj_grm_fac > -1.0)); in fit_bivar_reml() 183 string prev_file = grm_files[0]; in fit_bivar_reml() 187 for (k = 0; k < grm_files.size(); k++) { in fit_bivar_reml() 189 read_grm(grm_files[k], grm_id, true, false, !(adj_grm_fac > -1.0)); in fit_bivar_reml() 221 prev_file = grm_files[k]; in fit_bivar_reml() 272 for (i = 0; i < grm_files.size(); i++) { in fit_bivar_reml() [all …]
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H A D | grm.cpp | 516 vector<string> grm_files, grm_id; in merge_grm() local 517 read_grm_filenames(merge_grm_file, grm_files); in merge_grm() 520 for (f = 0; f < grm_files.size(); f++) { in merge_grm() 521 read_grm(grm_files[f], grm_id, false, true); in merge_grm() 533 for (f = 0; f < grm_files.size(); f++) { in merge_grm() 535 read_grm(grm_files[f], grm_id); in merge_grm() 558 cout << "\n" << grm_files.size() << " GRMs have been merged together." << endl; in merge_grm() 561 void gcta::read_grm_filenames(string merge_grm_file, vector<string> &grm_files, bool out_log) { in read_grm_filenames() argument 565 grm_files.clear(); in read_grm_filenames() 569 if (StrFunc::split_string(str_buf, vs_buf) == 1) grm_files.push_back(vs_buf[0]); in read_grm_filenames() [all …]
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H A D | est_hsq.cpp | 193 grm_files.push_back(grm_file); in fit_reml() 196 read_grm_filenames(grm_file, grm_files, false); in fit_reml() 197 for (i = 0; i < grm_files.size(); i++) { in fit_reml() 297 string prev_file = grm_files[0]; in fit_reml() 329 prev_file = grm_files[i]; in fit_reml() 382 for (i = 0; i < grm_files.size(); i++) { in fit_reml() 384 if (grm_files.size() == 1) strstrm << ""; in fit_reml() 390 for (i = 0; i < grm_files.size(); i++) { in fit_reml() 392 if (grm_files.size() == 1) strstrm1 << ""; in fit_reml() 401 for (i = 0; i < grm_files.size(); i++) { in fit_reml() [all …]
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H A D | gcta.h | 223 void read_grm_filenames(string merge_grm_file, vector<string> &grm_files, bool out_log = true);
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