| /dports/biology/gcta/gcta_1.26.0_src/ |
| H A D | mlm_assoc.cpp | 30 vector<string> phen_ID, qcovar_ID, covar_ID, grm_id; in mlma() local
49 update_id_map_kp(grm_id, _id_map, _keep); in mlma()
55 read_grm(grm_file, grm_id, true, false, true); in mlma()
56 update_id_map_kp(grm_id, _id_map, _keep); in mlma()
62 update_id_map_kp(grm_id, _id_map, _keep); in mlma()
100 StrFunc::match(uni_id, grm_id, kp); in mlma()
120 StrFunc::match(uni_id, grm_id, kp); in mlma()
135 StrFunc::match(uni_id, grm_id, kp); in mlma()
148 StrFunc::match(uni_id, grm_id, kp); in mlma()
160 StrFunc::match(uni_id, grm_id, kp); in mlma()
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| H A D | grm.cpp | 260 grm_id.clear(); in read_grm_id()
269 grm_id.push_back(id_buf); in read_grm_id()
273 int n = grm_id.size(); in read_grm_id()
484 vector<string> grm_id; in manipulate_grm() local
516 vector<string> grm_files, grm_id; in merge_grm() local
521 read_grm(grm_files[f], grm_id, false, true); in merge_grm()
522 update_id_map_kp(grm_id, _id_map, _keep); in merge_grm()
535 read_grm(grm_files[f], grm_id); in merge_grm()
536 StrFunc::match(uni_id, grm_id, kp); in merge_grm()
580 vector<string> grm_id; in grm_bK() local
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| H A D | bivar_reml.cpp | 31 vector<string> phen_ID, qcovar_ID, covar_ID, grm_id, grm_files; in fit_bivar_reml() local
35 read_grm(grm_file, grm_id, true, false, !(adj_grm_fac > -1.0)); in fit_bivar_reml()
36 update_id_map_kp(grm_id, _id_map, _keep); in fit_bivar_reml()
42 read_grm(grm_files[i], grm_id, false, true, !(adj_grm_fac > -1.0)); in fit_bivar_reml()
43 update_id_map_kp(grm_id, _id_map, _keep); in fit_bivar_reml()
184 vector<string> prev_grm_id(grm_id); in fit_bivar_reml()
189 read_grm(grm_files[k], grm_id, true, false, !(adj_grm_fac > -1.0)); in fit_bivar_reml()
192 StrFunc::match(uni_id, grm_id, kp); in fit_bivar_reml()
222 prev_grm_id = grm_id; in fit_bivar_reml()
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| H A D | est_hsq.cpp | 191 read_grm(grm_file, grm_id, true, false, !(adj_grm_fac > -1.0)); in fit_reml()
192 update_id_map_kp(grm_id, _id_map, _keep); in fit_reml()
198 read_grm(grm_files[i], grm_id, false, true, !(adj_grm_fac > -1.0)); in fit_reml()
199 update_id_map_kp(grm_id, _id_map, _keep); in fit_reml()
270 if (mlmassoc) StrFunc::match(uni_id, grm_id, kp); in fit_reml()
298 vector<string> prev_grm_id(grm_id); in fit_reml()
305 StrFunc::match(uni_id, grm_id, kp); in fit_reml()
330 prev_grm_id = grm_id; in fit_reml()
1486 vector<string> phen_ID, grm_id; in HE_reg() local
1489 read_grm(grm_file, grm_id, true, false, true); in HE_reg()
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| H A D | gcta.h | 219 int read_grm_id(string grm_file, vector<string> &grm_id, bool out_id_log, bool read_id_only);
220 …void read_grm(string grm_file, vector<string> &grm_id, bool out_id_log = true, bool read_id_only =…
221 …void read_grm_gz(string grm_file, vector<string> &grm_id, bool out_id_log = true, bool read_id_onl…
222 …void read_grm_bin(string grm_file, vector<string> &grm_id, bool out_id_log = true, bool read_id_on…
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