Searched refs:gsl_matrix_safe_alloc (Results 1 – 9 of 9) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | gemma.cpp | 1732 gsl_matrix *W = gsl_matrix_safe_alloc(Y->size1, cPar.n_cvt); in BatchRun() 1733 gsl_matrix *G = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun() 1734 gsl_matrix *U = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun() 1735 gsl_matrix *UtW = gsl_matrix_safe_alloc(Y->size1, W->size2); in BatchRun() 1736 gsl_matrix *UtY = gsl_matrix_safe_alloc(Y->size1, Y->size2); in BatchRun() 2561 gsl_matrix *G = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun() 2562 gsl_matrix *U = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun() 2857 gsl_matrix *W = gsl_matrix_safe_alloc(y->size, cPar.n_cvt); in BatchRun() 2858 gsl_matrix *G = gsl_matrix_safe_alloc(y->size, y->size); in BatchRun() 2882 gsl_matrix *U = gsl_matrix_safe_alloc(y->size, y->size); in BatchRun() [all …]
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H A D | lmm.cpp | 494 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_f() 552 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_dev1() 650 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_dev2() 727 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_dev12() 1490 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(inds, msize); in Analyze() 1491 gsl_matrix *UtXlarge = gsl_matrix_safe_alloc(inds, msize); in Analyze() 1896 gsl_matrix *Utw = gsl_matrix_safe_alloc(Uty->size, 1); in MatrixCalcLR() 1897 gsl_matrix *Uab = gsl_matrix_safe_alloc(Uty->size, 6); in MatrixCalcLR() 2108 gsl_matrix *Uab = gsl_matrix_safe_alloc(ni_test, n_index); in CalcLambda() 2135 gsl_matrix *Uab = gsl_matrix_safe_alloc(ni_test, n_index); in CalcPve() [all …]
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H A D | mathfunc.cpp | 206 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterMatrix() 207 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterMatrix() 208 gsl_matrix *WtWiWt = gsl_matrix_safe_alloc(W->size2, G->size1); in CenterMatrix() 209 gsl_matrix *GW = gsl_matrix_safe_alloc(G->size1, W->size2); in CenterMatrix() 210 gsl_matrix *WtGW = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterMatrix() 211 gsl_matrix *Gtmp = gsl_matrix_safe_alloc(G->size1, G->size1); in CenterMatrix() 309 auto G2 = gsl_matrix_safe_alloc(G->size1, G->size2); in isMatrixPositiveDefinite() 328 auto G2 = gsl_matrix_safe_alloc(G->size1, G->size2); in getEigenValues() 456 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterVector() 498 gsl_matrix *X = gsl_matrix_safe_alloc(UtX->size1, UtX->size2); in CalcUtX()
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H A D | gemma_io.cpp | 655 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_geno() 656 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_geno() 877 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_bed() 878 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_bed() 1422 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(ni_total, msize); in BimbamKin() 1606 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(ni_total, msize); in PlinkKin() 2763 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in BimbamKinUncentered() 2764 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in BimbamKinUncentered() 2782 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(ni_test, msize * n_vc); in BimbamKinUncentered() 2955 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in PlinkKin() [all …]
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H A D | logistic.cpp | 227 gsl_matrix *myH = gsl_matrix_safe_alloc(npar, npar); // Hessian matrix. in logistic_mixed_fit() 459 gsl_matrix *myH = gsl_matrix_safe_alloc(npar, npar); // Hessian matrix. in logistic_cat_fit() 677 gsl_matrix *myH = gsl_matrix_safe_alloc(npar, npar); // Hessian matrix. in logistic_cont_fit()
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H A D | debug.h | 66 gsl_matrix *gsl_matrix_safe_alloc(size_t rows,size_t cols);
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H A D | debug.cpp | 211 gsl_matrix *gsl_matrix_safe_alloc(size_t rows,size_t cols) { in gsl_matrix_safe_alloc() function
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H A D | param.cpp | 278 auto W1 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles() 311 auto W2 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles() 365 W3 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles() 409 gsl_matrix *W4 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles()
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/dports/biology/gemma/GEMMA-0.98.3/test/src/ |
H A D | unittests-math.cpp | 161 gsl_matrix *AM = gsl_matrix_safe_alloc(m,k); // rows x cols 162 gsl_matrix *BM = gsl_matrix_safe_alloc(k,n);
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