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Searched refs:gsl_matrix_safe_alloc (Results 1 – 9 of 9) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma.cpp1732 gsl_matrix *W = gsl_matrix_safe_alloc(Y->size1, cPar.n_cvt); in BatchRun()
1733 gsl_matrix *G = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun()
1734 gsl_matrix *U = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun()
1735 gsl_matrix *UtW = gsl_matrix_safe_alloc(Y->size1, W->size2); in BatchRun()
1736 gsl_matrix *UtY = gsl_matrix_safe_alloc(Y->size1, Y->size2); in BatchRun()
2561 gsl_matrix *G = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun()
2562 gsl_matrix *U = gsl_matrix_safe_alloc(Y->size1, Y->size1); in BatchRun()
2857 gsl_matrix *W = gsl_matrix_safe_alloc(y->size, cPar.n_cvt); in BatchRun()
2858 gsl_matrix *G = gsl_matrix_safe_alloc(y->size, y->size); in BatchRun()
2882 gsl_matrix *U = gsl_matrix_safe_alloc(y->size, y->size); in BatchRun()
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H A Dlmm.cpp494 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_f()
552 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_dev1()
650 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_dev2()
727 gsl_matrix *Pab = gsl_matrix_safe_alloc(n_cvt + 2, n_index); in LogL_dev12()
1490 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(inds, msize); in Analyze()
1491 gsl_matrix *UtXlarge = gsl_matrix_safe_alloc(inds, msize); in Analyze()
1896 gsl_matrix *Utw = gsl_matrix_safe_alloc(Uty->size, 1); in MatrixCalcLR()
1897 gsl_matrix *Uab = gsl_matrix_safe_alloc(Uty->size, 6); in MatrixCalcLR()
2108 gsl_matrix *Uab = gsl_matrix_safe_alloc(ni_test, n_index); in CalcLambda()
2135 gsl_matrix *Uab = gsl_matrix_safe_alloc(ni_test, n_index); in CalcPve()
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H A Dmathfunc.cpp206 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterMatrix()
207 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterMatrix()
208 gsl_matrix *WtWiWt = gsl_matrix_safe_alloc(W->size2, G->size1); in CenterMatrix()
209 gsl_matrix *GW = gsl_matrix_safe_alloc(G->size1, W->size2); in CenterMatrix()
210 gsl_matrix *WtGW = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterMatrix()
211 gsl_matrix *Gtmp = gsl_matrix_safe_alloc(G->size1, G->size1); in CenterMatrix()
309 auto G2 = gsl_matrix_safe_alloc(G->size1, G->size2); in isMatrixPositiveDefinite()
328 auto G2 = gsl_matrix_safe_alloc(G->size1, G->size2); in getEigenValues()
456 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in CenterVector()
498 gsl_matrix *X = gsl_matrix_safe_alloc(UtX->size1, UtX->size2); in CalcUtX()
H A Dgemma_io.cpp655 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_geno()
656 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_geno()
877 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_bed()
878 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in ReadFile_bed()
1422 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(ni_total, msize); in BimbamKin()
1606 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(ni_total, msize); in PlinkKin()
2763 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in BimbamKinUncentered()
2764 gsl_matrix *WtWi = gsl_matrix_safe_alloc(W->size2, W->size2); in BimbamKinUncentered()
2782 gsl_matrix *Xlarge = gsl_matrix_safe_alloc(ni_test, msize * n_vc); in BimbamKinUncentered()
2955 gsl_matrix *WtW = gsl_matrix_safe_alloc(W->size2, W->size2); in PlinkKin()
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H A Dlogistic.cpp227 gsl_matrix *myH = gsl_matrix_safe_alloc(npar, npar); // Hessian matrix. in logistic_mixed_fit()
459 gsl_matrix *myH = gsl_matrix_safe_alloc(npar, npar); // Hessian matrix. in logistic_cat_fit()
677 gsl_matrix *myH = gsl_matrix_safe_alloc(npar, npar); // Hessian matrix. in logistic_cont_fit()
H A Ddebug.h66 gsl_matrix *gsl_matrix_safe_alloc(size_t rows,size_t cols);
H A Ddebug.cpp211 gsl_matrix *gsl_matrix_safe_alloc(size_t rows,size_t cols) { in gsl_matrix_safe_alloc() function
H A Dparam.cpp278 auto W1 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles()
311 auto W2 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles()
365 W3 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles()
409 gsl_matrix *W4 = gsl_matrix_safe_alloc(ni_test, n_cvt); in ReadFiles()
/dports/biology/gemma/GEMMA-0.98.3/test/src/
H A Dunittests-math.cpp161 gsl_matrix *AM = gsl_matrix_safe_alloc(m,k); // rows x cols
162 gsl_matrix *BM = gsl_matrix_safe_alloc(k,n);