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Searched refs:h_meta (Results 1 – 16 of 16) sorted by relevance

/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dcram_io.c1524 if (r->h_meta) { in refs_free()
1527 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
1530 if (!kh_exist(r->h_meta, k)) in refs_free()
1538 kh_destroy(refs, r->h_meta); in refs_free()
1568 if (!(r->h_meta = kh_init(refs))) in refs_create()
1722 kh_val(r->h_meta, k) = e; in refs_load_fai()
1732 kh_val(r->h_meta, k) = e; in refs_load_fai()
1771 if (!fd->refs || !fd->refs->h_meta) in sanitise_SQ_lines()
1781 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
1824 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h621 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dcram_io.c1524 if (r->h_meta) { in refs_free()
1527 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
1530 if (!kh_exist(r->h_meta, k)) in refs_free()
1538 kh_destroy(refs, r->h_meta); in refs_free()
1568 if (!(r->h_meta = kh_init(refs))) in refs_create()
1722 kh_val(r->h_meta, k) = e; in refs_load_fai()
1732 kh_val(r->h_meta, k) = e; in refs_load_fai()
1771 if (!fd->refs || !fd->refs->h_meta) in sanitise_SQ_lines()
1781 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
1824 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h621 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dcram_io.c1519 if (r->h_meta) { in refs_free()
1522 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
1525 if (!kh_exist(r->h_meta, k)) in refs_free()
1527 if (!(e = kh_val(r->h_meta, k))) in refs_free()
1533 kh_destroy(refs, r->h_meta); in refs_free()
1563 if (!(r->h_meta = kh_init(refs))) in refs_create()
1717 kh_val(r->h_meta, k) = e; in refs_load_fai()
1727 kh_val(r->h_meta, k) = e; in refs_load_fai()
1776 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
1819 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h617 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dcram_io.c1515 if (r->h_meta) { in refs_free()
1518 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
1521 if (!kh_exist(r->h_meta, k)) in refs_free()
1523 if (!(e = kh_val(r->h_meta, k))) in refs_free()
1529 kh_destroy(refs, r->h_meta); in refs_free()
1559 if (!(r->h_meta = kh_init(refs))) in refs_create()
1713 kh_val(r->h_meta, k) = e; in refs_load_fai()
1723 kh_val(r->h_meta, k) = e; in refs_load_fai()
1772 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
1816 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h617 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A Dcram_io.c1699 if (r->h_meta) { in refs_free()
1702 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
1705 if (!kh_exist(r->h_meta, k)) in refs_free()
1713 kh_destroy(refs, r->h_meta); in refs_free()
1743 if (!(r->h_meta = kh_init(refs))) in refs_create()
1901 kh_val(r->h_meta, k) = e; in refs_load_fai()
1911 kh_val(r->h_meta, k) = e; in refs_load_fai()
1955 if (!fd->refs || !fd->refs->h_meta) in sanitise_SQ_lines()
1965 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
2009 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h627 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/
H A Dcram_io.c2391 if (r->h_meta) { in refs_free()
2394 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
2397 if (!kh_exist(r->h_meta, k)) in refs_free()
2405 kh_destroy(refs, r->h_meta); in refs_free()
2435 if (!(r->h_meta = kh_init(refs))) in refs_create()
2593 kh_val(r->h_meta, k) = e; in refs_load_fai()
2603 kh_val(r->h_meta, k) = e; in refs_load_fai()
2647 if (!fd->refs || !fd->refs->h_meta) in sanitise_SQ_lines()
2657 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
2701 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h685 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/htslib/htslib-1.14/cram/
H A Dcram_io.c2391 if (r->h_meta) { in refs_free()
2394 for (k = kh_begin(r->h_meta); k != kh_end(r->h_meta); k++) { in refs_free()
2397 if (!kh_exist(r->h_meta, k)) in refs_free()
2405 kh_destroy(refs, r->h_meta); in refs_free()
2435 if (!(r->h_meta = kh_init(refs))) in refs_create()
2593 kh_val(r->h_meta, k) = e; in refs_load_fai()
2603 kh_val(r->h_meta, k) = e; in refs_load_fai()
2647 if (!fd->refs || !fd->refs->h_meta) in sanitise_SQ_lines()
2657 if (k == kh_end(fd->refs->h_meta)) in sanitise_SQ_lines()
2701 if (k != kh_end(r->h_meta)) { in refs2id()
[all …]
H A Dcram_structs.h685 khash_t(refs) *h_meta; // ref_entry*, index by name
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dcram_io.c2467 if (r->h_meta) { in refs_free()
2471 while ((hi = HashTableIterNext(r->h_meta, iter))) { in refs_free()
2480 HashTableDestroy(r->h_meta, 0); in refs_free()
2510 r->h_meta = HashTableCreate(16, HASH_DYNAMIC_SIZE | HASH_NONVOLATILE_KEYS); in refs_create()
2511 if (!r->h_meta) in refs_create()
2622 if (!(hi = HashTableAdd(r->h_meta, e->name, strlen(e->name), hd, &n))){ in refs_load_fai()
2680 if (!fd->refs || !fd->refs->h_meta) in sanitise_SQ_lines()
2685 HashItem *hi = HashTableSearch(fd->refs->h_meta, name, 0); in sanitise_SQ_lines()
2734 if ((hi = HashTableSearch(r->h_meta, h->ref[i].name, 0))) { in refs2id()
2777 if (HashTableSearch(r->h_meta, h->ref[i].name, strlen(h->ref[i].name))) in refs_from_header()
[all …]
H A Dcram_structs.h630 HashTable *h_meta; // ref_entry*, index by name member