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Searched refs:hasWellDefinedFragmentSize (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/
H A DReadUtils.java527 if ( ! hasWellDefinedFragmentSize(read) ) { in getAdaptorBoundary()
546 public static boolean hasWellDefinedFragmentSize(final GATKRead read) { in hasWellDefinedFragmentSize() method in ReadUtils
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/read/
H A DReadUtilsUnitTest.java350 Assert.assertEquals(ReadUtils.hasWellDefinedFragmentSize(read), expected); in testHasWellDefinedFragmentSize()
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/
H A DAssemblyBasedCallerUtils.java128 … GATKRead read = (dontUseSoftClippedBases || ! ReadUtils.hasWellDefinedFragmentSize(originalRead) ? in finalizeRegion()